Butyrate-producing Eubacterium rectale suppresses lymphomagenesis by alleviating the TNF-induced TLR4/MyD88/NF-κB axis

Therapeutic IL-6 trans-signalling inhibition by olamkicept (sgp130Fc) in patients with active inflammatory bowel disease

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Microbial Regulation of Host Physiology by Short-chain Fatty Acids

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Gut bacteria identified in colorectal cancer patients promote tumourigenesis via butyrate secretion

(2021) Shintaro Okumura et al.   Nature Communications

Diet and Gut Microbes Act Coordinately to Enhance Programmed Cell Death and Reduce Colorectal Cancer Risk

(2020) Robert S. Chapkin et al.   DIGESTIVE DISEASES AND SCIENCES

Mutational signature in colorectal cancer caused by genotoxic pks+ E. coli

(2020) Cayetano Pleguezuelos-Manzano et al.   NATURE

MYD88 in the driver’s seat of B-cell lymphomagenesis: from molecular mechanisms to clinical implications

(2019) Ruben A.L. de Groen et al.   HAEMATOLOGICA

Hematologic malignancies of the gastrointestinal luminal tract

(2019) Abdelrahman K. Hanafy et al.   Abdominal Radiology

Serum microRNA signatures and metabolomics have high diagnostic value in colorectal cancer using two novel methods

(2018) Hai-Ning Liu et al.   CANCER SCIENCE

Patients with familial adenomatous polyposis harbor colonic biofilms containing tumorigenic bacteria

(2018) Christine M. Dejea et al.   SCIENCE

Inflammasomes in the gastrointestinal tract: infection, cancer and gut microbiota homeostasis

(2018) Si Ming Man   Nature Reviews Gastroenterology & Hepatology

Helicobacter pylori, gastric cancer and other gastrointestinal malignancies

(2017) Marino Venerito et al.   HELICOBACTER

The 2016 updated WHO classification of lymphoid neoplasias

(2017) Leticia Quintanilla-Martinez   HEMATOLOGICAL ONCOLOGY

Gut microbiome and serum metabolome alterations in obesity and after weight-loss intervention

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Transplantation of fecal microbiota from patients with irritable bowel syndrome alters gut function and behavior in recipient mice

(2017) Giada De Palma et al.   Science Translational Medicine

Colonic Butyrate-Producing Communities in Humans: an Overview Using Omics Data

(2017) Marius Vital et al.   mSystems

The microbiota in adaptive immune homeostasis and disease

(2016) Kenya Honda et al.   NATURE

Metagenome-wide association studies: fine-mining the microbiome

(2016) Jun Wang et al.   NATURE REVIEWS MICROBIOLOGY

GPR41 and GPR43 in Obesity and Inflammation – Protective or Causative?

(2016) Zhiwei Ang et al.   Frontiers in Immunology

Metagenomic analysis of faecal microbiome as a tool towards targeted non-invasive biomarkers for colorectal cancer

(2015) Jun Yu et al.   GUT

limma powers differential expression analyses for RNA-sequencing and microarray studies

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ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap

(2015) Tauno Metsalu et al.   NUCLEIC ACIDS RESEARCH

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Role of the Microbiota in Immunity and Inflammation

(2014) Yasmine Belkaid et al.   CELL

Bacteroides fragilis subverts mucosal biology: from symbiont to colon carcinogenesis

(2014) Cynthia L. Sears et al.   JOURNAL OF CLINICAL INVESTIGATION

The gut microbiota, bacterial metabolites and colorectal cancer

(2014) Petra Louis et al.   NATURE REVIEWS MICROBIOLOGY

Toll-Like Receptors and Cancer: MYD88 Mutation and Inflammation

(2014) James Q. Wang et al.   Frontiers in Immunology

Decreased dietary fiber intake and structural alteration of gut microbiota in patients with advanced colorectal adenoma

(2013) Hui-Min Chen et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

GSVA: gene set variation analysis for microarray and RNA-Seq data

(2013) Sonja Hänzelmann et al.   BMC BIOINFORMATICS

Fusobacterium nucleatum Potentiates Intestinal Tumorigenesis and Modulates the Tumor-Immune Microenvironment

(2013) Aleksandar D. Kostic et al.   Cell Host & Microbe

Fusobacterium nucleatum Promotes Colorectal Carcinogenesis by Modulating E-Cadherin/β-Catenin Signaling via its FadA Adhesin

(2013) Mara Roxana Rubinstein et al.   Cell Host & Microbe

Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells

(2013) Yukihiro Furusawa et al.   NATURE

BLAST: a more efficient report with usability improvements

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High Prevalence of Mucosa-Associated E. coli Producing Cyclomodulin and Genotoxin in Colon Cancer

(2013) Emmanuel Buc et al.   PLoS One

Commensal Clostridia: leading players in the maintenance of gut homeostasis

(2013) Loris R Lopetuso et al.   Gut Pathogens

The sva package for removing batch effects and other unwanted variation in high-throughput experiments

(2012) Jeffrey T. Leek et al.   BIOINFORMATICS

The Warburg Effect Dictates the Mechanism of Butyrate-Mediated Histone Acetylation and Cell Proliferation

(2012) Dallas R. Donohoe et al.   MOLECULAR CELL

Involvement of TNFα-induced TLR4–NF-κB and TLR4–HIF-1α feed-forward loops in the regulation of inflammatory responses in glioma

(2011) Richa Tewari et al.   JOURNAL OF MOLECULAR MEDICINE-JMM

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Gastric MALT lymphoma: a model of chronic inflammation-induced tumor development

(2010) Xavier Sagaert et al.   Nature Reviews Gastroenterology & Hepatology