System-Wide Analysis of the GATC-Binding Nucleoid-Associated Protein Gbn and Its Impact on Streptomyces Development

Spatial rearrangement of the Streptomyces venezuelae linear chromosome during sporogenic development

(2021) Marcin J. Szafran et al.   Nature Communications

When is a transcription factor a NAP?

(2020) Charles J Dorman et al.   CURRENT OPINION IN MICROBIOLOGY

BldC Delays Entry into Development To Produce a Sustained Period of Vegetative Growth in Streptomyces venezuelae

(2019) Matthew J. Bush et al.   mBio

Silencing cryptic specialized metabolism in Streptomyces by the nucleoid-associated protein Lsr2

(2019) Emma J Gehrke et al.   eLife

Chromosome organization in bacteria: mechanistic insights into genome structure and function

(2019) Remus T. Dame et al.   NATURE REVIEWS GENETICS

Structural basis for osmotic regulation of the DNA binding properties of H-NS proteins

(2019) Liang Qin et al.   NUCLEIC ACIDS RESEARCH

OUP accepted manuscript

(2018)   BIOINFORMATICS

Regulation of antibiotic production in Actinobacteria: new perspectives from the post-genomic era

(2018) Helga U. van der Heul et al.   NATURAL PRODUCT REPORTS

HMMER web server: 2018 update

(2018) Simon C Potter et al.   NUCLEIC ACIDS RESEARCH

Sporulation-specific cell division defects in ylmE mutants of Streptomyces coelicolor are rescued by additional deletion of ylmD

(2018) Le Zhang et al.   Scientific Reports

Heavy-tailed prior distributions for sequence count data: removing the noise and preserving large differences

(2018) Anqi Zhu et al.   BIOINFORMATICS

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

Mechanism of environmentally driven conformational changes that modulate H-NS DNA-bridging activity

(2017) Ramon A van der Valk et al.   eLife

Assembly of the Escherichia coli NADH:ubiquinone oxidoreductase (respiratory complex I)

(2016) Thorsten Friedrich et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Intertwining nutrient-sensory networks and the control of antibiotic production inStreptomyces

(2016) Mia Urem et al.   MOLECULAR MICROBIOLOGY

Transcriptional analysis of the cell division-related ssg genes in Streptomyces coelicolor reveals direct control of ssgR by AtrA

(2015) Songhee H. Kim et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Taxonomy, Physiology, and Natural Products of Actinobacteria

(2015) Essaid Ait Barka et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The I-TASSER Suite: protein structure and function prediction

(2015) Jianyi Yang et al.   NATURE METHODS

The two kinases, AbrC1 and AbrC2, of the atypical two-component system AbrC are needed to regulate antibiotic production and differentiation in Streptomyces coelicolor

(2015) Héctor Rodríguez et al.   Frontiers in Microbiology

Effect of Temperature on the Intrinsic Flexibility of DNA and Its Interaction with Architectural Proteins

(2014) Rosalie P. C. Driessen et al.   BIOCHEMISTRY

Bacterial solutions to multicellularity: a tale of biofilms, filaments and fruiting bodies

(2014) Dennis Claessen et al.   NATURE REVIEWS MICROBIOLOGY

High-Efficiency Multiplex Genome Editing of Streptomyces Species Using an Engineered CRISPR/Cas System

(2014) Ryan E. Cobb et al.   ACS Synthetic Biology

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Proteomic survey of the Streptomyces coelicolor nucleoid

(2013) Elizabeth Bradshaw et al.   Journal of Proteomics

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Competition between the GlnR and PhoP regulators for the glnA and amtB promoters in Streptomyces coelicolor

(2012) Alberto Sola-Landa et al.   NUCLEIC ACIDS RESEARCH

NCBI GEO: archive for functional genomics data sets—update

(2012) Tanya Barrett et al.   NUCLEIC ACIDS RESEARCH

A novel function of Streptomyces integration host factor (sIHF) in the control of antibiotic production and sporulation in Streptomyces coelicolor

(2011) Yung-Hun Yang et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Pybedtools: a flexible Python library for manipulating genomic datasets and annotations

(2011) Ryan K. Dale et al.   BIOINFORMATICS

MEME-ChIP: motif analysis of large DNA datasets

(2011) Philip Machanick et al.   BIOINFORMATICS

Positive control of cell division: FtsZ is recruited by SsgB during sporulation of Streptomyces

(2011) J. Willemse et al.   GENES & DEVELOPMENT

Functional Analysis of the N-Acetylglucosamine Metabolic Genes of Streptomyces coelicolor and Role in Control of Development and Antibiotic Production

(2011) M. A. Swiatek et al.   JOURNAL OF BACTERIOLOGY

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Genome-wide inference of regulatory networks in Streptomyces coelicolor

(2010) Marlene Castro-Melchor et al.   BMC GENOMICS

The dynamic architecture of the metabolic switch in Streptomyces coelicolor

(2010) Kay Nieselt et al.   BMC GENOMICS

Activation of the SoxR Regulon in Streptomyces coelicolor by the Extracellular Form of the Pigmented Antibiotic Actinorhodin

(2010) J.-H. Shin et al.   JOURNAL OF BACTERIOLOGY

Bacterial nucleoid-associated proteins, nucleoid structure and gene expression

(2010) Shane C. Dillon et al.   NATURE REVIEWS MICROBIOLOGY

Cleavage of Phosphorothioated DNA and Methylated DNA by the Type IV Restriction Endonuclease ScoMcrA

(2010) Guang Liu et al.   PLoS Genetics

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Biopython: freely available Python tools for computational molecular biology and bioinformatics

(2009) P. J. A. Cock et al.   BIOINFORMATICS

Characterization of the methyl-specific restriction system ofStreptomyces coelicolorA3(2) and of the role played by laterally acquired nucleases

(2009) Gabriela González-Cerón et al.   FEMS MICROBIOLOGY LETTERS

One of the Two Genes Encoding Nucleoid-Associated HU Proteins in Streptomyces coelicolor Is Developmentally Regulated and Specifically Involved in Spore Maturation

(2009) P. Salerno et al.   JOURNAL OF BACTERIOLOGY

Functional expression of the Cre recombinase in actinomycetes

(2008) Marta Fedoryshyn et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The use of the rare UUA codon to define “Expression Space” for genes involved in secondary metabolism, development and environmental adaptation in Streptomyces

(2008) Keith F. Chater et al.   JOURNAL OF MICROBIOLOGY

Streptomyces morphogenetics: dissecting differentiation in a filamentous bacterium

(2008) Klas Flärdh et al.   NATURE REVIEWS MICROBIOLOGY

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY