Biogeography, succession, and origin of the chicken intestinal mycobiome

Intestinal mycobiota in health and diseases: from a disrupted equilibrium to clinical opportunities

(2021) Xiaoyan Wu et al.   Microbiome

The Role of the Gut Microbiome in Cattle Production and Health: Driver or Passenger?

(2020) Eóin O'Hara et al.   Annual Review of Animal Biosciences

Composition and Function of Chicken Gut Microbiota

(2020) Ivan Rychlik   Animals

Chicken Intestinal Mycobiome: Initial Characterization and Its Response to Bacitracin Methylene Disalicylate

(2020) Kelsy Robinson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Eggshell and environmental bacteria contribute to the intestinal microbiota of growing chickens

(2020) Joel J. Maki et al.   Journal of Animal Science and Biotechnology

Gut microbiota in human metabolic health and disease

(2020) Yong Fan et al.   NATURE REVIEWS MICROBIOLOGY

The gut mycobiota: insights into analysis, environmental interactions and role in gastrointestinal diseases

(2019) Mathias L. Richard et al.   Nature Reviews Gastroenterology & Hepatology

Development and Function of the Intestinal Microbiome and Potential Implications for Pig Production

(2019) Tanya Nowland et al.   Animals

Mycotoxins produced by Fusarium proliferatum and F. pseudonygamai on maize, sorghum and pearl millet grains in vitro

(2019) Hester F. Vismer et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

The Piglet Mycobiome During the Weaning Transition: A Pilot Study

(2019) Katie L Summers et al.   JOURNAL OF ANIMAL SCIENCE

Gut Mycobiota in Immunity and Inflammatory Disease

(2019) Xin V. Li et al.   IMMUNITY

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Longitudinal investigation of the swine gut microbiome from birth to market reveals stage and growth performance associated bacteria

(2019) Xiaofan Wang et al.   Microbiome

Antibiotics and Host-Tailored Probiotics Similarly Modulate Effects on the Developing Avian Microbiome, Mycobiome, and Host Gene Expression

(2019) Tonya L. Ward et al.   mBio

Yeasts of Burden: Exploring the Mycobiome–Bacteriome of the Piglet GI Tract

(2019) Ann M. Arfken et al.   Frontiers in Microbiology

Maternal milk and fecal microbes guide the spatiotemporal development of mucosa-associated microbiota and barrier function in the porcine neonatal gut

(2019) Hongbin Liu et al.   BMC BIOLOGY

Yeasts isolated from cloacal swabs, feces, and eggs of laying hens

(2018) Claudia Cafarchia et al.   MEDICAL MYCOLOGY

Current understanding of the human microbiome

(2018) Jack A Gilbert et al.   NATURE MEDICINE

Mycobiome diversity: high-throughput sequencing and identification of fungi

(2018) R. Henrik Nilsson et al.   NATURE REVIEWS MICROBIOLOGY

The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications

(2018) Rolf Henrik Nilsson et al.   NUCLEIC ACIDS RESEARCH

The Human Microbiome and Child Growth – First 1000 Days and Beyond

(2018) Ruairi C. Robertson et al.   TRENDS IN MICROBIOLOGY

The Divided Bacterial Genome: Structure, Function, and Evolution

(2017) George C. diCenzo et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The identification of fungi collected from the ceca of commercial poultry

(2017) J. A. Byrd et al.   POULTRY SCIENCE

The gut mycobiome of the Human Microbiome Project healthy cohort

(2017) Andrea K. Nash et al.   Microbiome

Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns

(2017) Amnon Amir et al.   mSystems

Bacterial Succession in the Broiler Gastrointestinal Tract

(2016) Samir Ranjitkar et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fungal identification using a Bayesian classifier and the Warcup training set of internal transcribed spacer sequences

(2016) Vinita Deshpande et al.   MYCOLOGIA

Age and Gender Affect the Composition of Fungal Population of the Human Gastrointestinal Tract

(2016) Francesco Strati et al.   Frontiers in Microbiology

Changes in the composition of intestinal fungi and their role in mice with dextran sulfate sodium-induced colitis

(2015) Xinyun Qiu et al.   Scientific Reports

Aspergillus fumigatus and Related Species

(2014) J. A. Sugui et al.   Cold Spring Harbor Perspectives in Medicine

Taxonomic revision of Eurotium and transfer of species to Aspergillus

(2013) Vit Hubka et al.   MYCOLOGIA

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Fungi of the Murine Gut: Episodic Variation and Proliferation during Antibiotic Treatment

(2013) Serena Dollive et al.   PLoS One

Molecular Identification and Characterization of Ileal and Cecal Fungus Communities in Broilers Given Probiotics, Specific Essential Oil Blends, and Under Mixed Eimeria Infection

(2012) Michael E. Hume et al.   Foodborne Pathogens and Disease

Interactions Between Commensal Fungi and the C-Type Lectin Receptor Dectin-1 Influence Colitis

(2012) I. D. Iliev et al.   SCIENCE

Current Knowledge of Trichosporon spp. and Trichosporonosis

(2011) A. L. Colombo et al.   CLINICAL MICROBIOLOGY REVIEWS

Bayesian community-wide culture-independent microbial source tracking

(2011) Dan Knights et al.   NATURE METHODS

Phylogenetic diversity and community structure of anaerobic gut fungi (phylum Neocallimastigomycota) in ruminant and non-ruminant herbivores

(2010) Audra S Liggenstoffer et al.   ISME Journal

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fungi and inflammatory bowel diseases: Alterations of composition and diversity

(2008) Stephan J. Ott et al.   SCANDINAVIAN JOURNAL OF GASTROENTEROLOGY