标题
Diversity in the soil virosphere: to infinity and beyond?
作者
关键词
soil microbiomes, viral ecology, soil viruses, bacteriophages, metagenomics, viromics
出版物
TRENDS IN MICROBIOLOGY
Volume -, Issue -, Pages -
出版商
Elsevier BV
发表日期
2022-05-26
DOI
10.1016/j.tim.2022.05.003
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Massive expansion of human gut bacteriophage diversity
- (2021) Luis F. Camarillo-Guerrero et al. CELL
- Metagenomic tools in microbial ecology research
- (2021) Neslihan Taş et al. CURRENT OPINION IN BIOTECHNOLOGY
- Viromes outperform total metagenomes in revealing the spatiotemporal patterns of agricultural soil viral communities
- (2021) Christian Santos-Medellin et al. ISME Journal
- Interaction dynamics and virus–host range for estuarine actinophages captured by epicPCR
- (2021) Eric G. Sakowski et al. Nature Microbiology
- VirION2: a short- and long-read sequencing and informatics workflow to study the genomic diversity of viruses in nature
- (2021) Olivier Zablocki et al. PeerJ
- Methane-derived carbon flows into host–virus networks at different trophic levels in soil
- (2021) Sungeun Lee et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Global overview and major challenges of host prediction methods for uncultivated phages
- (2021) Clément Coclet et al. Current Opinion in Virology
- Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome
- (2021) Stephen Nayfach et al. Nature Microbiology
- Temporal Changes of Virus-Like Particle Abundance and Metagenomic Comparison of Viral Communities in Cropland and Prairie Soils
- (2021) Carolyn R. Cornell et al. mSphere
- Stable-Isotope-Informed, Genome-Resolved Metagenomics Uncovers Potential Cross-Kingdom Interactions in Rhizosphere Soil
- (2021) Evan P. Starr et al. mSphere
- DNase Treatment Improves Viral Enrichment in Agricultural Soil Viromes
- (2021) Jackson W. Sorensen et al. mSystems
- Viral Community and Virus-Associated Antibiotic Resistance Genes in Soils Amended with Organic Fertilizers
- (2021) Mo-Lian Chen et al. ENVIRONMENTAL SCIENCE & TECHNOLOGY
- Phage co-transport with hyphal-riding bacteria fuels bacterial invasion in a water-unsaturated microbial model system
- (2021) Xin You et al. ISME Journal
- DNA Viral Diversity, Abundance, and Functional Potential Vary across Grassland Soils with a Range of Historical Moisture Regimes
- (2021) Ruonan Wu et al. mBio
- Current challenges to virus discovery by meta-transcriptomics
- (2021) Joanna CA Cobbin et al. Current Opinion in Virology
- Active virus-host interactions at sub-freezing temperatures in Arctic peat soil
- (2021) Gareth Trubl et al. Microbiome
- Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations
- (2021) Anneliek M. ter Horst et al. Microbiome
- Dormant phages communicate via arbitrium to control exit from lysogeny
- (2021) Nitzan Aframian et al. Nature Microbiology
- Clades of huge phages from across Earth’s ecosystems
- (2020) Basem Al-Shayeb et al. NATURE
- Phage diversity, genomics and phylogeny
- (2020) Moïra B. Dion et al. NATURE REVIEWS MICROBIOLOGY
- Lysogenic reproductive strategies of viral communities vary with soil depth and are correlated with bacterial diversity
- (2020) Xiaolong Liang et al. SOIL BIOLOGY & BIOCHEMISTRY
- Uncovering a hidden diversity: optimized protocols for the extraction of dsDNA bacteriophages from soil
- (2020) Pauline C. Göller et al. Microbiome
- Expansion of known ssRNA phage genomes: From tens to over a thousand
- (2020) J. Callanan et al. Science Advances
- Diversity and potential biogeochemical impacts of viruses in bulk and rhizosphere soils
- (2020) Li Bi et al. ENVIRONMENTAL MICROBIOLOGY
- Rewetting of soil: Revisiting the origin of soil CO2 emissions
- (2020) Romain L. Barnard et al. SOIL BIOLOGY & BIOCHEMISTRY
- Inclusion of Oxford Nanopore long reads improves all microbial and viral metagenome‐assembled genomes from a complex aquifer system
- (2020) Will A. Overholt et al. ENVIRONMENTAL MICROBIOLOGY
- Insights into the dynamics between viruses and their hosts in a hot spring microbial mat
- (2020) Jessica K. Jarett et al. ISME Journal
- Terabase-scale metagenome coassembly with MetaHipMer
- (2020) Steven Hofmeyr et al. Scientific Reports
- Temporal Dynamics of Soil Virus and Bacterial Populations in Agricultural and Early Plant Successional Soils
- (2020) Krishnakali Roy et al. Frontiers in Microbiology
- Doubling of the known set of RNA viruses by metagenomic analysis of an aquatic virome
- (2020) Yuri I. Wolf et al. Nature Microbiology
- The Gut Virome Database Reveals Age-Dependent Patterns of Virome Diversity in the Human Gut
- (2020) Ann C. Gregory et al. Cell Host & Microbe
- The physical structure of soil: Determinant and consequence of trophic interactions
- (2020) Amandine Erktan et al. SOIL BIOLOGY & BIOCHEMISTRY
- Actinobacteriophages: Genomics, Dynamics, and Applications
- (2020) Graham F. Hatfull Annual Review of Virology
- Long-read viral metagenomics captures abundant and microdiverse viral populations and their niche-defining genomic islands
- (2019) Joanna Warwick-Dugdale et al. PeerJ
- Soil Viruses: A New Hope
- (2019) Joanne B. Emerson mSystems
- Systematic review and meta-analysis of decay rates of waterborne mammalian viruses and coliphages in surface waters
- (2019) Alexandria B. Boehm et al. WATER RESEARCH
- Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps
- (2019) Alexander T. Dilthey et al. Nature Communications
- Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils
- (2019) Gareth Trubl et al. PeerJ
- Implication of Viral Infections for Greenhouse Gas Dynamics in Freshwater Wetlands: Challenges and Perspectives
- (2019) Giuditta Bonetti et al. Frontiers in Microbiology
- The pan-immune system of bacteria: antiviral defence as a community resource
- (2019) Aude Bernheim et al. NATURE REVIEWS MICROBIOLOGY
- Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil
- (2019) Evan P. Starr et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Characteristics of Wetting-Induced Bacteriophage Blooms in Biological Soil Crust
- (2019) Marc W. Van Goethem et al. mBio
- Long-term stability and Red Queen-like strain dynamics in marine viruses
- (2019) J. Cesar Ignacio-Espinoza et al. Nature Microbiology
- Deposition rates of viruses and bacteria above the atmospheric boundary layer
- (2018) Isabel Reche et al. ISME Journal
- The ‘Neglected’ Soil Virome – Potential Role and Impact
- (2018) Akbar Adjie Pratama et al. TRENDS IN MICROBIOLOGY
- Host-linked soil viral ecology along a permafrost thaw gradient
- (2018) Joanne B. Emerson et al. Nature Microbiology
- Nonpareil 3: Fast Estimation of Metagenomic Coverage and Sequence Diversity
- (2018) Luis M. Rodriguez-R et al. mSystems
- Diversity of active viral infections within the Sphagnum microbiome
- (2018) Joshua M.A. Stough et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- A Host-Produced Quorum-Sensing Autoinducer Controls a Phage Lysis-Lysogeny Decision
- (2018) Justin E. Silpe et al. CELL
- Minimum Information about an Uncultivated Virus Genome (MIUViG)
- (2018) Simon Roux et al. NATURE BIOTECHNOLOGY
- Viruses in soil: Nano-scale undead drivers of microbial life, biogeochemical turnover and ecosystem functions
- (2018) Yakov Kuzyakov et al. SOIL BIOLOGY & BIOCHEMISTRY
- Hidden diversity of soil giant viruses
- (2018) Frederik Schulz et al. Nature Communications
- Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages
- (2018) Samuel Jacquiod et al. Microbiome
- Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing
- (2018) Gareth Trubl et al. mSystems
- Lysogeny in nature: mechanisms, impact and ecology of temperate phages
- (2017) Cristina Howard-Varona et al. ISME Journal
- A communal catalogue reveals Earth’s multiscale microbial diversity
- (2017) Luke R. Thompson et al. NATURE
- Embracing the unknown: disentangling the complexities of the soil microbiome
- (2017) Noah Fierer NATURE REVIEWS MICROBIOLOGY
- Single-virus genomics reveals hidden cosmopolitan and abundant viruses
- (2017) Francisco Martinez-Hernandez et al. Nature Communications
- Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity
- (2017) Simon Roux et al. PeerJ
- Viruses in Soil Ecosystems: An Unknown Quantity Within an Unexplored Territory
- (2017) Kurt E. Williamson et al. Annual Review of Virology
- Environmental drivers of viral community composition in Antarctic soils identified by viromics
- (2017) Evelien M. Adriaenssens et al. Microbiome
- Lytic to temperate switching of viral communities
- (2016) B. Knowles et al. NATURE
- Back to the Future of Soil Metagenomics
- (2016) Joseph Nesme et al. Frontiers in Microbiology
- Optimization of viral resuspension methods for carbon-rich soils along a permafrost thaw gradient
- (2016) Gareth Trubl et al. PeerJ
- Massively parallel sequencing of single cells by epicPCR links functional genes with phylogenetic markers
- (2015) Sarah J Spencer et al. ISME Journal
- A new perspective on lysogeny: prophages as active regulatory switches of bacteria
- (2015) Ron Feiner et al. NATURE REVIEWS MICROBIOLOGY
- Viromes, Not Gene Markers, for Studying Double-Stranded DNA Virus Communities
- (2014) Matthew B. Sullivan JOURNAL OF VIROLOGY
- Tackling soil diversity with the assembly of large, complex metagenomes
- (2014) Adina Chuang Howe et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics
- (2014) Simon Roux et al. eLife
- Estimates of viral abundance in soils are strongly influenced by extraction and enumeration methods
- (2013) Kurt E. Williamson et al. BIOLOGY AND FERTILITY OF SOILS
- Application of metatranscriptomics to soil environments
- (2012) Lilia C. Carvalhais et al. JOURNAL OF MICROBIOLOGICAL METHODS
- Microbial seed banks: the ecological and evolutionary implications of dormancy
- (2011) Jay T. Lennon et al. NATURE REVIEWS MICROBIOLOGY
- Bacteria-Phage Antagonistic Coevolution in Soil
- (2011) P. Gomez et al. SCIENCE
- Ecology of viruses in soils: Past, present and future perspectives
- (2010) Makoto Kimura et al. SOIL SCIENCE AND PLANT NUTRITION
- Local Adaptation of Bacteriophages to Their Bacterial Hosts in Soil
- (2009) M. Vos et al. SCIENCE
- Phages across the biosphere: contrasts of viruses in soil and aquatic environments
- (2008) Sharath Srinivasiah et al. RESEARCH IN MICROBIOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started