Viromes outperform total metagenomes in revealing the spatiotemporal patterns of agricultural soil viral communities
出版年份 2021 全文链接
标题
Viromes outperform total metagenomes in revealing the spatiotemporal patterns of agricultural soil viral communities
作者
关键词
-
出版物
ISME Journal
Volume -, Issue -, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-02-22
DOI
10.1038/s41396-021-00897-y
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Uncovering a hidden diversity: optimized protocols for the extraction of dsDNA bacteriophages from soil
- (2020) Pauline C. Göller et al. Microbiome
- Honey bees harbor a diverse gut virome engaging in nested strain-level interactions with the microbiota
- (2020) Germán Bonilla-Rosso et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks
- (2019) Ho Bin Jang et al. NATURE BIOTECHNOLOGY
- Soil Viruses: A New Hope
- (2019) Joanne B. Emerson mSystems
- Comparison of the sequencing bias of currently available library preparation kits for Illumina sequencing of bacterial genomes and metagenomes
- (2019) Mitsuhiko P Sato et al. DNA RESEARCH
- A preliminary examination of bacterial, archaeal, and fungal communities inhabiting different rhizocompartments of tomato plants under real-world environments
- (2019) Shin Ae Lee et al. Scientific Reports
- Towards optimized viral metagenomes for double-stranded and single-stranded DNA viruses from challenging soils
- (2019) Gareth Trubl et al. PeerJ
- Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil
- (2019) Evan P. Starr et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Pyrogenic organic matter effects on soil bacterial community composition
- (2019) Jamie Woolet et al. SOIL BIOLOGY & BIOCHEMISTRY
- Characteristics of Wetting-Induced Bacteriophage Blooms in Biological Soil Crust
- (2019) Marc W. Van Goethem et al. mBio
- The ‘Neglected’ Soil Virome – Potential Role and Impact
- (2018) Akbar Adjie Pratama et al. TRENDS IN MICROBIOLOGY
- Compositional shifts in root-associated bacterial and archaeal microbiota track the plant life cycle in field-grown rice
- (2018) Joseph A. Edwards et al. PLOS BIOLOGY
- Correcting for 16S rRNA gene copy numbers in microbiome surveys remains an unsolved problem
- (2018) Stilianos Louca et al. Microbiome
- Host-linked soil viral ecology along a permafrost thaw gradient
- (2018) Joanne B. Emerson et al. Nature Microbiology
- Minimum Information about an Uncultivated Virus Genome (MIUViG)
- (2018) Simon Roux et al. NATURE BIOTECHNOLOGY
- Viruses in soil: Nano-scale undead drivers of microbial life, biogeochemical turnover and ecosystem functions
- (2018) Yakov Kuzyakov et al. SOIL BIOLOGY & BIOCHEMISTRY
- Soil Viruses Are Underexplored Players in Ecosystem Carbon Processing
- (2018) Gareth Trubl et al. mSystems
- A communal catalogue reveals Earth’s multiscale microbial diversity
- (2017) Luke R. Thompson et al. NATURE
- Embracing the unknown: disentangling the complexities of the soil microbiome
- (2017) Noah Fierer NATURE REVIEWS MICROBIOLOGY
- Tales of diversity: Genomic and morphological characteristics of forty-six Arthrobacter phages
- (2017) Karen K. Klyczek et al. PLoS One
- Soil Viral Communities Vary Temporally and along a Land Use Transect as Revealed by Virus-Like Particle Counting and a Modified Community Fingerprinting Approach (fRAPD)
- (2017) Anja Narr et al. Frontiers in Microbiology
- Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity
- (2017) Simon Roux et al. PeerJ
- Viruses in Soil Ecosystems: An Unknown Quantity Within an Unexplored Territory
- (2017) Kurt E. Williamson et al. Annual Review of Virology
- Comparative activity and functional ecology of permafrost soils and lithic niches in a hyper-arid polar desert
- (2016) Jacqueline Goordial et al. ENVIRONMENTAL MICROBIOLOGY
- Dynamics of microbial community composition and soil organic carbon mineralization in soil following addition of pyrogenic and fresh organic matter
- (2016) Thea Whitman et al. ISME Journal
- Uncovering Earth’s virome
- (2016) David Paez-Espino et al. NATURE
- Virocell Metabolism: Metabolic Innovations During Host–Virus Interactions in the Ocean
- (2016) Shilo Rosenwasser et al. TRENDS IN MICROBIOLOGY
- Optimization of viral resuspension methods for carbon-rich soils along a permafrost thaw gradient
- (2016) Gareth Trubl et al. PeerJ
- A new view of the tree of life
- (2016) Laura A. Hug et al. Nature Microbiology
- MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
- (2015) Dinghua Li et al. BIOINFORMATICS
- Rising to the challenge: accelerated pace of discovery transforms marine virology
- (2015) Jennifer R. Brum et al. NATURE REVIEWS MICROBIOLOGY
- Plant compartment and biogeography affect microbiome composition in cultivated and native Agave species
- (2015) Devin Coleman-Derr et al. NEW PHYTOLOGIST
- Structure, variation, and assembly of the root-associated microbiomes of rice
- (2015) Joseph Edwards et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The reduced genomes of Parcubacteria (OD1) contain signatures of a symbiotic lifestyle
- (2015) William C. Nelson et al. Frontiers in Microbiology
- VirSorter: mining viral signal from microbial genomic data
- (2015) Simon Roux et al. PeerJ
- Comparative analysis of the microbial communities in agricultural soil amended with enhanced biochars or traditional fertilisers
- (2014) Shaun Nielsen et al. AGRICULTURE ECOSYSTEMS & ENVIRONMENT
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- Tackling soil diversity with the assembly of large, complex metagenomes
- (2014) Adina Chuang Howe et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Cultivation of a human-associated TM7 phylotype reveals a reduced genome and epibiotic parasitic lifestyle
- (2014) Xuesong He et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Caught in the middle with multiple displacement amplification: the myth of pooling for avoiding multiple displacement amplification bias in a metagenome
- (2014) Rachel Marine et al. Microbiome
- Sequencing platform and library preparation choices impact viral metagenomes
- (2013) Sergei A Solonenko et al. BMC GENOMICS
- Diversity and heritability of the maize rhizosphere microbiome under field conditions
- (2013) J. A. Peiffer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
- (2012) Evguenia Kopylova et al. BIOINFORMATICS
- Defining the core Arabidopsis thaliana root microbiome
- (2012) Derek S. Lundberg et al. NATURE
- Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota
- (2012) Davide Bulgarelli et al. NATURE
- Phage auxiliary metabolic genes and the redirection of cyanobacterial host carbon metabolism
- (2011) L. R. Thompson et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Effect of banded biochar on dryland wheat production and fertiliser use in south-western Australia: an agronomic and economic perspective
- (2010) Paul Blackwell et al. AUSTRALIAN JOURNAL OF SOIL RESEARCH
- CD-HIT Suite: a web server for clustering and comparing biological sequences
- (2010) Ying Huang et al. BIOINFORMATICS
- Ecology of viruses in soils: Past, present and future perspectives
- (2010) Makoto Kimura et al. SOIL SCIENCE AND PLANT NUTRITION
- A simple and efficient method for concentration of ocean viruses by chemical flocculation
- (2010) Seth G. John et al. Environmental Microbiology Reports
- Laboratory procedures to generate viral metagenomes
- (2009) Rebecca V Thurber et al. Nature Protocols
- Amplification of Uncultured Single-Stranded DNA Viruses from Rice Paddy Soil
- (2008) K.-H. Kim et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
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