Genome-wide analysis of the long noncoding RNAs and mRNAs involved in flower bud development of Eucommia ulmoides Oliver

Re-analysis of long non-coding RNAs and prediction of circRNAs reveal their novel roles in susceptible tomato following TYLCV infection

(2018) Jinyan Wang et al.   BMC PLANT BIOLOGY

The Hardy Rubber Tree Genome Provides Insights into the Evolution of Polyisoprene Biosynthesis

(2018) Ta-na Wuyun et al.   Molecular Plant

Identification of the Sex-Biased Gene Expression and Putative Sex-Associated Genes in Eucommia ulmoides Oliver Using Comparative Transcriptome Analyses

(2017) Wencai Wang et al.   MOLECULES

Corrigendum: Genome-wide identification and functional prediction of cold and/or drought-responsive lncRNAs in cassava

(2017) Shuxia Li et al.   Scientific Reports

Fertilization Independent Endospermgenes repressNbGH3.6and regulate the auxin level during shoot development inNicotiana benthamiana

(2016) Jun Zeng et al.   JOURNAL OF EXPERIMENTAL BOTANY

A Century of Sex Determination in Flowering Plants

(2016) Alex Harkess et al.   JOURNAL OF HEREDITY

Transcription factors AS1 and AS2 interact with LHP1 to repressKNOXgenes inArabidopsis

(2016) Zhongfei Li et al.   Journal of Integrative Plant Biology

Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

(2016) Mihaela Pertea et al.   Nature Protocols

Genome-Wide Identification of MicroRNAs and Their Targets in the Leaves and Fruits of Eucommia ulmoides Using High-Throughput Sequencing

(2016) Lin Wang et al.   Frontiers in Plant Science

Enzymatic Hydrolysis and Simultaneous Extraction for Preparation of Genipin from Bark of Eucommia ulmoides after Ultrasound, Microwave Pretreatment

(2015) Lili Li et al.   MOLECULES

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

Ballgown bridges the gap between transcriptome assembly and expression analysis

(2015) Alyssa C Frazee et al.   NATURE BIOTECHNOLOGY

Sex-biased gene expression in dioecious garden asparagus (Asparagus officinalis)

(2015) Alex Harkess et al.   NEW PHYTOLOGIST

The relative and absolute frequencies of angiosperm sexual systems: Dioecy, monoecy, gynodioecy, and an updated online database

(2014) Susanne S. Renner   AMERICAN JOURNAL OF BOTANY

PIF1 promotes phytochrome-regulated growth under photoperiodic conditions in Arabidopsis together with PIF3, PIF4, and PIF5

(2014) Judit Soy et al.   JOURNAL OF EXPERIMENTAL BOTANY

Simultaneous quantification of eleven bioactive components of male flowers of Eucommia ulmoides oliver by HPLC and their quality evaluation by chemical fingerprint analysis with hierarchical clustering analysis

(2014) Qin Li et al.   Pharmacognosy Magazine

Identification of Internal Reference Genes for Gene Expression Normalization between the Two Sexes in Dioecious White Campion

(2014) Niklaus Zemp et al.   PLoS One

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Sex-biased gene expression at homomorphic sex chromosomes in emus and its implication for sex chromosome evolution

(2013) B. Vicoso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

On the classification of long non-coding RNAs

(2013) Lina Ma et al.   RNA Biology

Sex-biased genetic effects on gene regulation in humans

(2012) A. S. Dimas et al.   GENOME RESEARCH

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

A long noncoding RNA regulates photoperiod-sensitive male sterility, an essential component of hybrid rice

(2012) J. Ding et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions

(2011) M. F. Lin et al.   BIOINFORMATICS

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses

(2011) M. N. Cabili et al.   GENES & DEVELOPMENT

Effects of microwave drying on the contents of functional constituents of Eucommia ulmoides flower tea

(2011) Juane Dong et al.   INDUSTRIAL CROPS AND PRODUCTS

Dimerization and blue light regulation of PIF1 interacting bHLH proteins in Arabidopsis

(2011) Qingyun Bu et al.   PLANT MOLECULAR BIOLOGY

Multiple developmental processes underlie sex differentiation in angiosperms

(2011) Pamela K. Diggle et al.   TRENDS IN GENETICS

Identification of the composition of fatty acids in Eucommia ulmoides seed oil by fraction chain length and mass spectrometry

(2010) Liang-xiao Zhang et al.   FOOD CHEMISTRY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Molecular Signals of Epigenetic States

(2010) Roberto Bonasio et al.   SCIENCE

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

MYB108 Acts Together with MYB24 to Regulate Jasmonate-Mediated Stamen Maturation in Arabidopsis

(2008) A. Mandaokar et al.   PLANT PHYSIOLOGY

Heterologous overexpression of the birch FRUITFULL-like MADS-box gene BpMADS4 prevents normal senescence and winter dormancy in Populus tremula L.

(2008) Hans Hoenicka et al.   PLANTA