Genome-Wide Identification of MicroRNAs and Their Targets in the Leaves and Fruits of Eucommia ulmoides Using High-Throughput Sequencing

Identification of miRNAs and their targets through high-throughput sequencing and degradome analysis in male and female Asparagus officinalis

(2016) Jingli Chen et al.   BMC PLANT BIOLOGY

Comparative Transcriptome Analysis of Latex Reveals Molecular Mechanisms Underlying Increased Rubber Yield in Hevea brasiliensis Self-Rooting Juvenile Clones

(2016) Hui-Liang Li et al.   Frontiers in Plant Science

Identification of MicroRNAs and Their Targets Associated with Fruit-Bagging and Subsequent Sunlight Re-exposure in the “Granny Smith” Apple Exocarp Using High-Throughput Sequencing

(2016) Dong Qu et al.   Frontiers in Plant Science

Identification of novel and conserved microRNAs in Panax notoginseng roots by high-throughput sequencing

(2015) Rongchang Wei et al.   BMC GENOMICS

Identification of Nicotiana benthamiana microRNAs and their targets using high throughput sequencing and degradome analysis

(2015) Ivett Baksa et al.   BMC GENOMICS

Progressive Regulation of Sesquiterpene Biosynthesis in Arabidopsis and Patchouli (Pogostemon cablin) by the miR156-Targeted SPL Transcription Factors

(2015) Zong-Xia Yu et al.   Molecular Plant

Differential microRNA Analysis of Glandular Trichomes and Young Leaves in Xanthium strumarium L. Reveals Their Putative Roles in Regulating Terpenoid Biosynthesis

(2015) Rongyan Fan et al.   PLoS One

Identification and characterization of miRNAs in ripening fruit of Lycium barbarum L. using high-throughput sequencing

(2015) Shaohua Zeng et al.   Frontiers in Plant Science

Repbase Update, a database of repetitive elements in eukaryotic genomes

(2015) Weidong Bao et al.   Mobile DNA

Arabidopsis thalianahomeobox 12 (ATHB12), a homeodomain-leucine zipper protein, regulates leaf growth by promoting cell expansion and endoreduplication

(2014) Yoon-Sun Hur et al.   NEW PHYTOLOGIST

Involvement of ethylene-responsive microRNAs and their targets in increased latex yield in the rubber tree in response to ethylene treatment

(2014) Porawee Pramoolkit et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Physiological and Molecular Responses to Variation of Light Intensity in Rubber Tree (Hevea brasiliensis Muell. Arg.)

(2014) Li-feng Wang   PLoS One

Genome-Wide Identification of Different Dormant Medicago sativa L. MicroRNAs in Response to Fall Dormancy

(2014) Wenna Fan et al.   PLoS One

Characterization of HbWRKY1, a WRKY transcription factor from Hevea brasiliensis that negatively regulates HbSRPP

(2013) Ying Wang et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Deep Sequencing of Maize Small RNAs Reveals a Diverse Set of MicroRNA in Dry and Imbibed Seeds

(2013) Detao Li et al.   PLoS One

Transcriptome-Wide Identification and Characterization of MicroRNAs from Castor Bean (Ricinus communis L.)

(2013) Wei Xu et al.   PLoS One

The small RNA profile in latex from Hevea brasiliensis trees is affected by tapping panel dryness

(2013) V. Gebelin et al.   TREE PHYSIOLOGY

miREvo: an integrative microRNA evolutionary analysis platform for next-generation sequencing experiments

(2012) Ming Wen et al.   BMC BIOINFORMATICS

Overexpression of an isopentenyl diphosphate isomerase gene to enhance trans-polyisoprene production in Eucommia ulmoides Oliver

(2012) Ren Chen et al.   BMC BIOTECHNOLOGY

Identification and characterization of microRNAs and their target genes in Brassica oleracea

(2012) Jinyan Wang et al.   GENE

Isolation and Identification of miRNAs in Jatropha curcas

(2012) Chun Ming Wang et al.   International Journal of Biological Sciences

Transcriptional Regulation of Plant Secondary MetabolismF

(2012) Chang-Qing Yang et al.   Journal of Integrative Plant Biology

New Insights into Plant Isoprenoid Metabolism

(2012) Pablo Pulido et al.   Molecular Plant

Identification ofTaxusmicroRNAs and their targets with high-throughput sequencing and degradome analysis

(2012) Da-Cheng Hao et al.   PHYSIOLOGIA PLANTARUM

Genome-wide analysis of microRNAs in rubber tree (Hevea brasiliensis L.) using high-throughput sequencing

(2012) Manassawe Lertpanyasampatha et al.   PLANTA

Construction and analysis of EST libraries of the trans-polyisoprene producing plant, Eucommia ulmoides Oliver

(2012) Nobuaki Suzuki et al.   PLANTA

A Combined Approach of High-Throughput Sequencing and Degradome Analysis Reveals Tissue Specific Expression of MicroRNAs and Their Targets in Cucumber

(2012) Weihua Mao et al.   PLoS One

PlantNATsDB: a comprehensive database of plant natural antisense transcripts

(2011) D. Chen et al.   NUCLEIC ACIDS RESEARCH

psRNATarget: a plant small RNA target analysis server

(2011) Xinbin Dai et al.   NUCLEIC ACIDS RESEARCH

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades

(2011) Marc R. Friedländer et al.   NUCLEIC ACIDS RESEARCH

Production of Eucommia-rubber from Eucommia ulmoides Oliv. (Hardy Rubber Tree)

(2011) Yoshihisa Nakazawa et al.   Plant Biotechnology

cis- andtrans-Regulation of miR163 and Target Genes Confers Natural Variation of Secondary Metabolites in TwoArabidopsisSpecies and Their Allopolyploids

(2011) Danny W-K. Ng et al.   PLANT CELL

Evolution and Functional Diversification ofMIRNAGenes

(2011) Josh T. Cuperus et al.   PLANT CELL

Negative Regulation of Anthocyanin Biosynthesis inArabidopsisby a miR156-Targeted SPL Transcription Factor

(2011) Jin-Ying Gou et al.   PLANT CELL

MicroRNAs and their diverse functions in plants

(2011) Guiling Sun   PLANT MOLECULAR BIOLOGY

Integrated Profiling of MicroRNAs and mRNAs: MicroRNAs Located on Xq27.3 Associate with Clear Cell Renal Cell Carcinoma

(2011) Liang Zhou et al.   PLoS One

Molecular cloning and functional analysis of an organ-specific expressing gene coding for farnesyl diphosphate synthase from Michelia chapensis Dandy

(2010) Ting Yin et al.   ACTA PHYSIOLOGIAE PLANTARUM

Deep sequencing discovery of novel and conserved microRNAs in trifoliate orange (Citrus trifoliata)

(2010) Changnian Song et al.   BMC GENOMICS

Deep sequencing identifies novel and conserved microRNAs in peanuts (Arachis hypogaea L.)

(2010) Chuan-Zhi Zhao et al.   BMC PLANT BIOLOGY

Transcriptional Control of Gene Expression by MicroRNAs

(2010) Basel Khraiwesh et al.   CELL

miR396-targeted AtGRF transcription factors are required for coordination of cell division and differentiation during leaf development in Arabidopsis

(2010) Li Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

DNA Methylation Mediated by a MicroRNA Pathway

(2010) Liang Wu et al.   MOLECULAR CELL

Identification of conserved micro-RNAs and their target transcripts in opium poppy (Papaver somniferum L.)

(2010) Turgay Unver et al.   PLANT CELL REPORTS

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

Plant Phase Transitions Make a SPLash

(2009) Fabio Fornara et al.   CELL

Origin, Biogenesis, and Activity of Plant MicroRNAs

(2009) Olivier Voinnet   CELL

High throughput sequencing technology reveals that the taxoid elicitor methyl jasmonate regulates microRNA expression in Chinese yew (Taxus chinensis)

(2009) Deyou Qiu et al.   GENE

Isolation and Characterization of AaWRKY1, an Artemisia annua Transcription Factor that Regulates the Amorpha-4,11-diene Synthase Gene, a Key Gene of Artemisinin Biosynthesis

(2009) Dongming Ma et al.   PLANT AND CELL PHYSIOLOGY

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

A toolkit for analysing large-scale plant small RNA datasets

(2008) S. Moxon et al.   BIOINFORMATICS

Efficient regeneration of Eucommia ulmoides from hypocotyl explant

(2008) R. Chen et al.   BIOLOGIA PLANTARUM

Quantification of trans-1,4-polyisoprene in Eucommia ulmoides by fourier transform infrared spectroscopy and pyrolysis-gas chromatography/mass spectrometry

(2008) Shinya Takeno et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING