RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D

Enhanced validation of small-molecule ligands and carbohydrates in the Protein Data Bank

(2021) Zukang Feng et al.   STRUCTURE

Structure of papain-like protease from SARS-CoV-2 and its complexes with non-covalent inhibitors

(2021) Jerzy Osipiuk et al.   Nature Communications

From integrative structural biology to cell biology

(2021) Andrej Sali   JOURNAL OF BIOLOGICAL CHEMISTRY

Direct Observation of Protonation State Modulation in SARS-CoV-2 Main Protease upon Inhibitor Binding with Neutron Crystallography

(2021) Daniel W. Kneller et al.   JOURNAL OF MEDICINAL CHEMISTRY

Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures

(2021) David Sehnal et al.   NUCLEIC ACIDS RESEARCH

Structural impact on SARS-CoV-2 spike protein by D614G substitution

(2021) Jun Zhang et al.   SCIENCE

Open-access data: A cornerstone for artificial intelligence approaches to protein structure prediction

(2021) Stephen K. Burley et al.   STRUCTURE

Reduced neutralization of SARS-CoV-2 B.1.617 by vaccine and convalescent serum

(2021) Chang Liu et al.   CELL

Highly accurate protein structure prediction for the human proteome

(2021) Kathryn Tunyasuvunakool et al.   NATURE

Impact of the Protein Data Bank on antineoplastic approvals

(2020) John D. Westbrook et al.   DRUG DISCOVERY TODAY

Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation

(2020) Daniel Wrapp et al.   SCIENCE

Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein

(2020) Alexandra C. Walls et al.   CELL

How to help the free market fight coronavirus

(2020) Stephen K. Burley   NATURE

Structure of Mpro from SARS-CoV-2 and discovery of its inhibitors

(2020) Zhenming Jin et al.   NATURE

The GlyCosmos Portal: a unified and comprehensive web resource for the glycosciences

(2020) Issaku Yamada et al.   NATURE METHODS

Real time structural search of the Protein Data Bank

(2020) Dmytro Guzenko et al.   PLoS Computational Biology

RCSB Protein Data Bank 1D tools and services

(2020) Joan Segura et al.   BIOINFORMATICS

RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences

(2020) Stephen K Burley et al.   NUCLEIC ACIDS RESEARCH

Real-time structural motif searching in proteins using an inverted index strategy

(2020) Sebastian Bittrich et al.   PLoS Computational Biology

RCSB Protein Data Bank: Architectural Advances Towards Integrated Searching and Efficient Access to Macromolecular Structure Data from the PDB Archive

(2020) Yana Rose et al.   JOURNAL OF MOLECULAR BIOLOGY

BioJava 5: A community driven open-source bioinformatics library

(2019) Aleix Lafita et al.   PLoS Computational Biology

RCSB Protein Data Bank: Enabling biomedical research and drug discovery

(2019) David S. Goodsell et al.   PROTEIN SCIENCE

The SCOP database in 2020: expanded classification of representative family and superfamily domains of known protein structures

(2019) Antonina Andreeva et al.   NUCLEIC ACIDS RESEARCH

Structural model of the SARS coronavirus E channel in LMPG micelles

(2018) Wahyu Surya et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES

Investigation of protein quaternary structure via stoichiometry and symmetry ınformation

(2018) Selcuk Korkmaz et al.   PLoS One

Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data

(2018) Jasmine Y Young et al.   Database-The Journal of Biological Databases and Curation

Protein Data Bank: the single global archive for 3D macromolecular structure data

(2018) et al.   NUCLEIC ACIDS RESEARCH

RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy

(2018) Stephen K Burley et al.   NUCLEIC ACIDS RESEARCH

The MemProtMD database: a resource for membrane-embedded protein structures and their lipid interactions

(2018) Thomas D Newport et al.   NUCLEIC ACIDS RESEARCH

How Structural Biologists and the Protein Data Bank Contributed to Recent FDA New Drug Approvals

(2018) John D. Westbrook et al.   STRUCTURE

Analysis of impact metrics for the Protein Data Bank

(2018) Christopher Markosian et al.   Scientific Data

Outlier analyses of the Protein Data Bank archive using a probability-density-ranking approach

(2018) Chenghua Shao et al.   Scientific Data

GlyTouCan: an accessible glycan structure repository

(2017) Michael Tiemeyer et al.   GLYCOBIOLOGY

Data management: A global coalition to sustain core data

(2017) Warwick P. Anderson   NATURE

DrugBank 5.0: a major update to the DrugBank database for 2018

(2017) David S Wishart et al.   NUCLEIC ACIDS RESEARCH

OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive

(2017) Jasmine Y. Young et al.   STRUCTURE

Multivariate Analyses of Quality Metrics for Crystal Structures in the PDB Archive

(2017) Chenghua Shao et al.   STRUCTURE

Validation of Structures in the Protein Data Bank

(2017) Swanand Gore et al.   STRUCTURE

Cryo-EM structures of MERS-CoV and SARS-CoV spike glycoproteins reveal the dynamic receptor binding domains

(2017) Yuan Yuan et al.   Nature Communications

RCSB Protein Data Bank: A Resource for Chemical, Biochemical, and Structural Explorations of Large and Small Biomolecules

(2016) Christine Zardecki et al.   JOURNAL OF CHEMICAL EDUCATION

The ChEMBL database in 2017

(2016) Anna Gaulton et al.   NUCLEIC ACIDS RESEARCH

The Cambridge Structural Database

(2016) Colin R. Groom et al.   Acta Crystallographica Section B-Structural Science Crystal Engineering and Materials

ChEBI in 2016: Improved services and an expanding collection of metabolites

(2015) Janna Hastings et al.   NUCLEIC ACIDS RESEARCH

Membrane positioning for high- and low-resolution protein structures through a binary classification approach

(2015) Guillaume Postic et al.   PROTEIN ENGINEERING DESIGN & SELECTION

Manual classification strategies in the ECOD database

(2015) Hua Cheng et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

Detection of circular permutations within protein structures using CE-CP

(2014) S. E. Bliven et al.   BIOINFORMATICS

The chemical component dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank

(2014) John D. Westbrook et al.   BIOINFORMATICS

The Resolution Revolution

(2014) W. Kuhlbrandt   SCIENCE

Improving the representation of peptide-like inhibitor and antibiotic molecules in the Protein Data Bank

(2013) Shuchismita Dutta et al.   BIOPOLYMERS

SAbDab: the structural antibody database

(2013) James Dunbar et al.   NUCLEIC ACIDS RESEARCH

PDBTM: Protein Data Bank of transmembrane proteins after 8 years

(2012) Dániel Kozma et al.   NUCLEIC ACIDS RESEARCH

Crystallography Open Database (COD): an open-access collection of crystal structures and platform for world-wide collaboration

(2011) Saulius Gražulis et al.   NUCLEIC ACIDS RESEARCH

The RCSB Protein Data Bank: redesigned web site and web services

(2010) P. W. Rose et al.   NUCLEIC ACIDS RESEARCH

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Fast determination of the optimal rotational matrix for macromolecular superpositions

(2009) Pu Liu et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY