Importance of substrate quality and clay content on microbial extracellular polymeric substances production and aggregate stability in soils

Soil organic carbon, extracellular polymeric substances (EPS), and soil structural stability as affected by previous and current land-use

(2020) M. Redmile-Gordon et al.   GEODERMA

Site-Specific Conditions Change the Response of Bacterial Producers of Soil Structure-Stabilizing Agents Such as Exopolysaccharides and Lipopolysaccharides to Tillage Intensity

(2020) Barbara Cania et al.   Frontiers in Microbiology

Prokaryotic Community Composition and Extracellular Polymeric Substances Affect Soil Microaggregation in Carbonate Containing Semiarid Grasslands

(2020) Jeroen H. T. Zethof et al.   Frontiers in Environmental Science

Clay content modulates differences in bacterial community structure in soil aggregates of different size

(2020) Danh Biesgen et al.   GEODERMA

Clay-assisted protection of Enterobacter sp. from Pb (II) stress

(2020) Mu Su et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

Mineralization of organic carbon and formation of microbial biomass in soil: Effects of clay content and composition and the mechanisms involved

(2020) Fatemeh Rakhsh et al.   SOIL BIOLOGY & BIOCHEMISTRY

Persistent Activities of Extracellular Enzymes Adsorbed to Soil Minerals

(2020) Folasade K. Olagoke et al.   Microorganisms

Diversity and Function of Capsular Polysaccharide in Acinetobacter baumannii

(2019) Jennifer K. Singh et al.   Frontiers in Microbiology

Effect of long‐term organic and mineral fertilization strategies on rhizosphere microbiota assemblage and performance of lettuce

(2019) Soumitra Paul Chowdhury et al.   ENVIRONMENTAL MICROBIOLOGY

Influence of Soil Pore System Properties on the Degradation Rates of Organic Substances during Soil Aquifer Treatment (SAT)

(2019) Thomas Fichtner et al.   Applied Sciences-Basel

Initial microaggregate formation: Association of microorganisms to montmorillonite-goethite aggregates under wetting and drying cycles

(2019) Lars Krause et al.   GEODERMA

Function-driven single-cell genomics uncovers cellulose-degrading bacteria from the rare biosphere

(2019) Devin F. R. Doud et al.   ISME Journal

Modified clays alter diversity and respiration profile of microorganisms in long‐term hydrocarbon and metal co‐contaminated soil

(2019) Bhabananda Biswas et al.   Microbial Biotechnology

Effect of Different Substrates on Soil Microbial Community Structure and the Mechanisms of Reductive Soil Disinfestation

(2019) Xingyan Tan et al.   Frontiers in Microbiology

Production and structural characterization of exopolysaccharides from newly isolated probiotic lactic acid bacteria

(2018) Yousra Abid et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Microbial Extracellular Polymeric Substances: Ecological Function and Impact on Soil Aggregation

(2018) Ohana Y. A. Costa et al.   Frontiers in Microbiology

Bacillus subtilis biofilm development in the presence of soil clay minerals and iron oxides

(2017) Wenting Ma et al.   npj Biofilms and Microbiomes

Just in case it rains: building a hydrophobic biofilm the Bacillus subtilis way

(2016) Sofia Arnaouteli et al.   CURRENT OPINION IN MICROBIOLOGY

Erosion, deposition and soil carbon: A review of process-level controls, experimental tools and models to address C cycling in dynamic landscapes

(2016) Sebastian Doetterl et al.   EARTH-SCIENCE REVIEWS

Microorganism-induced weathering of clay minerals in a hydromorphic soil

(2016) Hanlie Hong et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Experimental evidence that clay inhibits bacterial decomposers: Implications for preservation of organic fossils

(2016) Sean McMahon et al.   GEOLOGY

Current knowledge and perspectives of Paenibacillus: a review

(2016) Elliot Nicholas Grady et al.   Microbial Cell Factories

Metabolic Responses of Bacterial Cells to Immobilization

(2016) Joanna Żur et al.   MOLECULES

Impact of Amendments on the Physical Properties of Soil under Tropical Long-Term No Till Conditions

(2016) Antonio C. A. Carmeis Filho et al.   PLoS One

The role of soil fungi and bacteria in plant litter decomposition and macroaggregate formation determined using phospholipid fatty acids

(2015) Mirjam Helfrich et al.   APPLIED SOIL ECOLOGY

The contentious nature of soil organic matter

(2015) Johannes Lehmann et al.   NATURE

Experimental Interactions Between Clay Minerals and Bacteria: A Review

(2015) Barbara MUELLER   PEDOSPHERE

Soil organic matter and the extracellular microbial matrix show contrasting responses to C and N availability

(2015) M.A. Redmile-Gordon et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil aggregate formation and stability induced by starch and cellulose

(2015) Katsutoshi Mizuta et al.   SOIL BIOLOGY & BIOCHEMISTRY

The Mineralosphere Concept: Mineralogical Control of the Distribution and Function of Mineral-associated Bacterial Communities

(2015) Stephane Uroz et al.   TRENDS IN MICROBIOLOGY

Oxygen diffusion in soils: Understanding the factors and processes needed for modeling

(2015) José Neira et al.   Chilean Journal of Agricultural Research

Soil Mineral Composition Matters: Response of Microbial Communities to Phenanthrene and Plant Litter Addition in Long-Term Matured Artificial Soils

(2014) Doreen Babin et al.   PLoS One

High clay content accelerates the decomposition of fresh organic matter in artificial soils

(2014) Hui Wei et al.   SOIL BIOLOGY & BIOCHEMISTRY

Measuring the soil-microbial interface: Extraction of extracellular polymeric substances (EPS) from soil biofilms

(2014) M.A. Redmile-Gordon et al.   SOIL BIOLOGY & BIOCHEMISTRY

Establishment of macro-aggregates and organic matter turnover by microbial communities in long-term incubated artificial soils

(2014) Cordula Vogel et al.   SOIL BIOLOGY & BIOCHEMISTRY

Identification and Functional Characterization of an α-Amylase with Broad Temperature and pH Stability from Paenibacillus sp.

(2013) Thangamani Rajesh et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

454 pyrosequencing analyses of bacterial and archaeal richness in 21 full-scale biogas digesters

(2013) Carina Sundberg et al.   FEMS MICROBIOLOGY ECOLOGY

Rate of soil-aggregate formation under different organic matter amendments-a short-term incubation experiment

(2013) Rouven Andruschkewitsch et al.   JOURNAL OF PLANT NUTRITION AND SOIL SCIENCE

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Clay mineral type effect on bacterial enteropathogen survival in soil

(2013) Fiona P. Brennan et al.   SCIENCE OF THE TOTAL ENVIRONMENT

A comparison of two colorimetric assays, based upon Lowry and Bradford techniques, to estimate total protein in soil extracts

(2013) M.A. Redmile-Gordon et al.   SOIL BIOLOGY & BIOCHEMISTRY

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Advances in bacterial exopolysaccharides: from production to biotechnological applications

(2011) Filomena Freitas et al.   TRENDS IN BIOTECHNOLOGY

Differential Growth Responses of Soil Bacterial Taxa to Carbon Substrates of Varying Chemical Recalcitrance

(2011) Katherine C. Goldfarb et al.   Frontiers in Microbiology

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rhizosphere Communities of Genetically Modified Zeaxanthin-Accumulating Potato Plants and Their Parent Cultivar Differ Less than Those of Different Potato Cultivars

(2009) N. Weinert et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metabolic impact and potential exploitation of the stress reactions in lactobacilli

(2009) Diana I. Serrazanetti et al.   FOOD MICROBIOLOGY

Relevance of Polymeric Matrix Enzymes During Biofilm Formation

(2008) Anna M. Romaní et al.   MICROBIAL ECOLOGY

The effects of organic inputs over time on soil aggregate stability – A literature analysis

(2008) Samuel Abiven et al.   SOIL BIOLOGY & BIOCHEMISTRY