Site-Specific Conditions Change the Response of Bacterial Producers of Soil Structure-Stabilizing Agents Such as Exopolysaccharides and Lipopolysaccharides to Tillage Intensity

Soil organic carbon, extracellular polymeric substances (EPS), and soil structural stability as affected by previous and current land-use

(2020) M. Redmile-Gordon et al.   GEODERMA

Biological Soil Crusts from Different Soil Substrates Harbor Distinct Bacterial Groups with the Potential to Produce Exopolysaccharides and Lipopolysaccharides

(2019) Barbara Cania et al.   MICROBIAL ECOLOGY

Bacterial potentials for uptake, solubilization and mineralization of extracellular phosphorus in agricultural soils are highly stable under different fertilization regimes

(2018) Martin Grafe et al.   Environmental Microbiology Reports

Function and functional redundancy in microbial systems

(2018) Stilianos Louca et al.   Nature Ecology & Evolution

Microbial Extracellular Polymeric Substances: Ecological Function and Impact on Soil Aggregation

(2018) Ohana Y. A. Costa et al.   Frontiers in Microbiology

Effect of Tillage Treatment on the Diversity of Soil Arbuscular Mycorrhizal Fungal and Soil Aggregate-Associated Carbon Content

(2018) Xingli Lu et al.   Frontiers in Microbiology

Impact of long-term agricultural management practices on soil prokaryotic communities

(2018) Doreen Babin et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microaggregates in soils

(2017) Kai Uwe Totsche et al.   JOURNAL OF PLANT NUTRITION AND SOIL SCIENCE

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

Soil biota contributions to soil aggregation

(2017) Anika Lehmann et al.   Nature Ecology & Evolution

Soil bacterial quantification approaches coupling with relative abundances reflecting the changes of taxa

(2017) Zhaojing Zhang et al.   Scientific Reports

Shallow non-inversion tillage in organic farming maintains crop yields and increases soil C stocks: a meta-analysis

(2016) Julia Cooper et al.   Agronomy for Sustainable Development

“Every Gene Is Everywhere but the Environment Selects”: Global Geolocalization of Gene Sharing in Environmental Samples through Network Analysis

(2016) Marco Fondi et al.   Genome Biology and Evolution

Fast and sensitive taxonomic classification for metagenomics with Kaiju

(2016) Peter Menzel et al.   Nature Communications

Water stability of soil aggregates in different systems of tillage

(2016) J. Bartlová et al.   Soil and Water Research

Experimental insights into the importance of aquatic bacterial community composition to the degradation of dissolved organic matter

(2015) Jürg B Logue et al.   ISME Journal

No tillage enhances arbuscular mycorrhizal fungal population, glomalin-related soil protein content, and organic carbon accumulation in soil macroaggregates

(2015) Jue Dai et al.   JOURNAL OF SOILS AND SEDIMENTS

The Pfam protein families database: towards a more sustainable future

(2015) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Impact of no-till and reduced tillage on aggregation and aggregate-associated carbon in Northern European agroecosystems

(2015) Jatta Sheehy et al.   SOIL & TILLAGE RESEARCH

Biosynthesis and Export of Bacterial Lipopolysaccharides

(2014) Chris Whitfield et al.   Annual Review of Biochemistry

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Measuring the soil-microbial interface: Extraction of extracellular polymeric substances (EPS) from soil biofilms

(2014) M.A. Redmile-Gordon et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil-Aggregating Bacterial Community as Affected by Irrigation, Tillage, and Cropping System in the Northern Great Plains

(2014) The Can Caesar-TonThat et al.   SOIL SCIENCE

Genome sequence of the lupin-nodulating Bradyrhizobium sp. strain WSM1417

(2014) Wayne Reeve et al.   Standards in Genomic Sciences

Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions

(2013) Jaina Mistry et al.   NUCLEIC ACIDS RESEARCH

Soil Microbial Biomass, Basal Respiration and Enzyme Activity of Main Forest Types in the Qinling Mountains

(2013) Fei Cheng et al.   PLoS One

Long-Term Tillage Impacts on Soil Aggregation and Carbon Dynamics under Wheat-Fallow in the Central Great Plains

(2013) Maysoon M. Mikha et al.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL

Soil aggregation and total diversity of bacteria and fungi in various tillage systems of sub-humid and semi-arid Kenya

(2012) J. Kihara et al.   APPLIED SOIL ECOLOGY

SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data

(2012) Evguenia Kopylova et al.   BIOINFORMATICS

Microbial composition affects the functioning of estuarine sediments

(2012) Heather E Reed et al.   ISME Journal

TIGRFAMs and Genome Properties in 2013

(2012) Daniel H. Haft et al.   NUCLEIC ACIDS RESEARCH

Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

(2011) Robert Schmieder et al.   PLoS One

FragGeneScan: predicting genes in short and error-prone reads

(2010) Mina Rho et al.   NUCLEIC ACIDS RESEARCH

Tillage, residue burning and crop rotation alter soil fungal community and water-stable aggregation in arable fields

(2010) Yin Wang et al.   SOIL & TILLAGE RESEARCH

Testing the functional significance of microbial community composition

(2009) Michael S. Strickland et al.   ECOLOGY

Truncation in the core oligosaccharide of lipopolysaccharide affects flagella-mediated motility in Pseudomonas aeruginosa PAO1 via modulation of cell surface attachment

(2009) T. Lindhout et al.   MICROBIOLOGY-SGM

Resistance, resilience, and redundancy in microbial communities

(2008) S. D. Allison et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Impact of reduced tillage on carbon and nitrogen storage of two Haplic Luvisols after 40 years

(2008) A JACOBS et al.   SOIL & TILLAGE RESEARCH

Characterizing the relationships between soil organic matter components and microbial function and composition along a tillage disturbance gradient

(2007) W. Richard Cookson et al.   SOIL BIOLOGY & BIOCHEMISTRY