Effect of long‐term organic and mineral fertilization strategies on rhizosphere microbiota assemblage and performance of lettuce

Long-term industrial metal contamination unexpectedly shaped diversity and activity response of sediment microbiome

(2018) Samuel Jacquiod et al.   JOURNAL OF HAZARDOUS MATERIALS

Changes in iron availability in Arabidopsis are rapidly sensed in the leaf vasculature and impaired sensing leads to opposite transcriptional programs in leaves and roots

(2018) Mather A. Khan et al.   PLANT CELL AND ENVIRONMENT

MYB72-dependent coumarin exudation shapes root microbiome assembly to promote plant health

(2018) Ioannis A. Stringlis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A global atlas of the dominant bacteria found in soil

(2018) Manuel Delgado-Baquerizo et al.   SCIENCE

Soil quality – A critical review

(2018) Else K. Bünemann et al.   SOIL BIOLOGY & BIOCHEMISTRY

Land-Use Intensity Rather Than Plant Functional Identity Shapes Bacterial and Fungal Rhizosphere Communities

(2018) Ricardo Schöps et al.   Frontiers in Microbiology

Current Insights into the Role of Rhizosphere Bacteria in Disease Suppressive Soils

(2017) Ruth Gómez Expósito et al.   Frontiers in Microbiology

Soil Microbiome Is More Heterogeneous in Organic Than in Conventional Farming System

(2017) Manoeli Lupatini et al.   Frontiers in Microbiology

Organic farming enhances soil microbial abundance and activity—A meta-analysis and meta-regression

(2017) Martina Lori et al.   PLoS One

Where, when and how plant-soil feedback matters in a changing world

(2016) Wim H. van der Putten et al.   FUNCTIONAL ECOLOGY

An Underground Revolution: Biodiversity and Soil Ecological Engineering for Agricultural Sustainability

(2016) S. Franz Bender et al.   TRENDS IN ECOLOGY & EVOLUTION

Recognizing Plant Defense Priming

(2016) Ainhoa Martinez-Medina et al.   TRENDS IN PLANT SCIENCE

Mineral vs. Organic Amendments: Microbial Community Structure, Activity and Abundance of Agriculturally Relevant Microbes Are Driven by Long-Term Fertilization Strategies

(2016) Davide Francioli et al.   Frontiers in Microbiology

The arabidopsis information resource: Making and mining the “gold standard” annotated reference plant genome

(2015) Tanya Z. Berardini et al.   GENESIS

The plant microbiome explored: implications for experimental botany

(2015) Gabriele Berg et al.   JOURNAL OF EXPERIMENTAL BOTANY

MYB Transcription Factors as Regulators of Phenylpropanoid Metabolism in Plants

(2015) Jingying Liu et al.   Molecular Plant

Cyclic Lipopeptides ofBacillus amyloliquefacienssubsp.plantarumColonizing the Lettuce Rhizosphere Enhance Plant Defense Responses Toward the Bottom Rot PathogenRhizoctonia solani

(2015) Soumitra Paul Chowdhury et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Impact of plant domestication on rhizosphere microbiome assembly and functions

(2015) Juan E. Pérez-Jaramillo et al.   PLANT MOLECULAR BIOLOGY

The ETHYLENE RESPONSE FACTORs ERF6 and ERF11 Antagonistically Regulate Mannitol-Induced Growth Inhibition in Arabidopsis

(2015) Marieke Dubois et al.   PLANT PHYSIOLOGY

Induced Systemic Resistance by Beneficial Microbes

(2014) Corné M.J. Pieterse et al.   Annual Review of Phytopathology

Distinct soil microbial diversity under long-term organic and conventional farming

(2014) Martin Hartmann et al.   ISME Journal

Selection on soil microbiomes reveals reproducible impacts on plant function

(2014) Kevin Panke-Buisse et al.   ISME Journal

Belowground biodiversity and ecosystem functioning

(2014) Richard D. Bardgett et al.   NATURE

N-Acyl-Homoserine Lactone Primes Plants for Cell Wall Reinforcement and Induces Resistance to Bacterial Pathogens via the Salicylic Acid/Oxylipin Pathway

(2014) S. T. Schenk et al.   PLANT CELL

OPT3 Is a Phloem-Specific Iron Transporter That Is Essential for Systemic Iron Signaling and Redistribution of Iron and Cadmium in Arabidopsis

(2014) Z. Zhai et al.   PLANT CELL

Long-term effects of mineral fertilizers on soil microorganisms – A review

(2014) Daniel Geisseler et al.   SOIL BIOLOGY & BIOCHEMISTRY

Establishment of macro-aggregates and organic matter turnover by microbial communities in long-term incubated artificial soils

(2014) Cordula Vogel et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effect of the soil type on the microbiome in the rhizosphere of field-grown lettuce

(2014) Susanne Schreiter et al.   Frontiers in Microbiology

454 pyrosequencing analyses of bacterial and archaeal richness in 21 full-scale biogas digesters

(2013) Carina Sundberg et al.   FEMS MICROBIOLOGY ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Comparative Genomic Analysis Indicates that Niche Adaptation of Terrestrial Flavobacteria Is Strongly Linked to Plant Glycan Metabolism

(2013) Max Kolton et al.   PLoS One

Plant growth in Arabidopsis is assisted by compost soil-derived microbial communities

(2013) Lilia C. Carvalhais et al.   Frontiers in Plant Science

The rhizosphere revisited: root microbiomics

(2013) Peter A. H. M. Bakker et al.   Frontiers in Plant Science

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Soil characteristics more strongly influence soil bacterial communities than land-use type

(2011) Eiko E. Kuramae et al.   FEMS MICROBIOLOGY ECOLOGY

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Evolutionary ecology of plant-microbe interactions: soil microbial structure alters selection on plant traits

(2011) Jennifer A. Lau et al.   NEW PHYTOLOGIST

Effects of 15 years of manure and inorganic fertilizers on soil organic carbon fractions in a wheat-maize system in the North China Plain

(2011) Qiong Liang et al.   NUTRIENT CYCLING IN AGROECOSYSTEMS

Differential gene expression of rice roots inoculated with the diazotroph Herbaspirillum seropedicae

(2011) L. C. C. Brusamarello-Santos et al.   PLANT AND SOIL

AtRbohF is a crucial modulator of defence-associated metabolism and a key actor in the interplay between intracellular oxidative stress and pathogenesis responses in Arabidopsis

(2011) Sejir Chaouch et al.   PLANT JOURNAL

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Gene expression profiling – Clusters of possibilities

(2010) Anders Bergkvist et al.   METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Nitrogen in Agriculture: Balancing the Cost of an Essential Resource

(2009) G. Philip Robertson et al.   Annual Review of Environment and Resources

Plant species and soil type cooperatively shape the structure and function of microbial communities in the rhizosphere

(2009) Gabriele Berg et al.   FEMS MICROBIOLOGY ECOLOGY

Reactive oxygen signaling and abiotic stress

(2008) Gad Miller et al.   PHYSIOLOGIA PLANTARUM