Sporophyte Stage Genes Exhibit Stronger Selection Than Gametophyte Stage Genes in Haplodiplontic Giant Kelp

Mates Matter: Gametophyte Kinship Recognition and Inbreeding in the Giant Kelp, Macrocystis pyrifera (Laminariales, Phaeophyceae)

(2021) Carolina Camus et al.   JOURNAL OF PHYCOLOGY

Kelp aquaculture in China: a retrospective and future prospects

(2021) Zi‐Min Hu et al.   Reviews in Aquaculture

A 20-year retrospective review of global aquaculture

(2021) Rosamond L. Naylor et al.   NATURE

BlobToolKit - Interactive Quality Assessment of Genome Assemblies

(2020) Richard Challis et al.   G3-Genes Genomes Genetics

Importance of Seaweeds and Extractive Species in Global Aquaculture Production

(2020) Thierry Chopin et al.   Reviews in Fisheries Science & Aquaculture

UniProt: the universal protein knowledgebase in 2021

(2020) et al.   NUCLEIC ACIDS RESEARCH

Enhancing yield on Macrocystis pyrifera (Ochrophyta): The effect of gametophytic developmental strategy

(2020) Alejandro H. Buschmann et al.   Algal Research-Biomass Biofuels and Bioproducts

iMKT: the integrative McDonald and Kreitman test

(2019) Jesús Murga-Moreno et al.   NUCLEIC ACIDS RESEARCH

Extending r/K selection with a maternal risk-management model that classifies animal species into divergent natural selection categories

(2019) Deby L. Cassill   Scientific Reports

The EMBL-EBI search and sequence analysis tools APIs in 2019

(2019) Fábio Madeira et al.   NUCLEIC ACIDS RESEARCH

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

An ecosystem approach to kelp aquaculture in the Americas and Europe

(2019) Gretchen S. Grebe et al.   Aquaculture Reports

Population genomics of the introduced and cultivated Pacific kelp Undaria pinnatifida : Marinas-not farms-drive regional connectivity and establishment in natural rocky reefs

(2018) Jaromir Guzinski et al.   Evolutionary Applications

Fine-scale population genetic structure of sugar kelp, Saccharina latissima (Laminariales, Phaeophyceae), in eastern Maine, USA

(2018) Timothy S. Breton et al.   PHYCOLOGIA

Prediction of skin anti-aging clinical benefits of an association of ingredients from marine and maritime origins: Ex vivo evaluation using a label-free quantitative proteomic and customized data processing approach

(2018) Sebastien Hameury et al.   Journal of Cosmetic Dermatology

First global transcriptome analysis of brown algae Macrocystis integrifolia (Phaeophyceae) under marine intertidal conditions

(2018) Erika Salavarría et al.   3 Biotech

First global transcriptome analysis of brown algae Macrocystis integrifolia (Phaeophyceae) under marine intertidal conditions

(2018) Erika Salavarría et al.   3 Biotech

Metabolites Unravel Nutraceutical Potential of Edible Seaweeds: An Emerging Source of Functional Food

(2018) Bhakti Tanna et al.   COMPREHENSIVE REVIEWS IN FOOD SCIENCE AND FOOD SAFETY

Hierarchical structuring of genetic variation at differing geographic scales in the cultivated sugar kelp Saccharina latissima

(2018) Karen M. Mooney et al.   MARINE ENVIRONMENTAL RESEARCH

Seaweed production: overview of the global state of exploitation, farming and emerging research activity

(2017) Alejandro H. Buschmann et al.   EUROPEAN JOURNAL OF PHYCOLOGY

A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors

(2017) Donald M. Bryant et al.   Cell Reports

Seaweeds for livestock diets: A review

(2016) Harinder P.S. Makkar et al.   ANIMAL FEED SCIENCE AND TECHNOLOGY

Scaling up bioethanol production from the farmed brown macroalgaMacrocystis pyriferain Chile

(2016) Carolina Camus et al.   Biofuels Bioproducts & Biorefining-Biofpr

Genetic load in marine animals: a review

(2016) Louis V. Plough   Current Zoology

vcfr: a package to manipulate and visualize variant call format data in R

(2016) Brian J. Knaus et al.   Molecular Ecology Resources

Genetic load in marine animals: a review

(2016) Louis V. Plough   Current Zoology

Connectivity structures local population dynamics: a long-term empirical test in a large metapopulation system

(2015) Max C. N. Castorani et al.   ECOLOGY

Applications of seaweed extracts in Australian agriculture: past, present and future

(2015) Tony Arioli et al.   JOURNAL OF APPLIED PHYCOLOGY

Seascape drivers ofMacrocystis pyriferapopulation genetic structure in the northeast Pacific

(2015) Mattias L. Johansson et al.   MOLECULAR ECOLOGY

Seaweed cultivation: potential and challenges of crop domestication at an unprecedented pace

(2015) Rafael Loureiro et al.   NEW PHYTOLOGIST

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Genetic and experimental evidence for a mixed-age, mixed-origin bank of kelp microscopic stages in southern California

(2013) Laura T. Carney et al.   ECOLOGY

Selection Is No More Efficient in Haploid than in Diploid Life Stages of an Angiosperm and a Moss

(2013) Péter Szövényi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Transcriptomic analysis of metabolic function in the giant kelp,Macrocystis pyrifera, across depth and season

(2013) Talina Konotchick et al.   NEW PHYTOLOGIST

A high-performance computing toolset for relatedness and principal component analysis of SNP data

(2012) X. Zheng et al.   BIOINFORMATICS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

VennDiagram: a package for the generation of highly-customizable Venn and Euler diagrams in R

(2011) Hanbo Chen et al.   BMC BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Role of bacterial isolates in enhancing the bud induction in the industrially important red alga Gracilaria dura

(2011) Ravindra Pal Singh et al.   FEMS MICROBIOLOGY ECOLOGY

A MULTISPECIES LABORATORY ASSESSMENT OF RAPID SPOROPHYTE RECRUITMENT FROM DELAYED KELP GAMETOPHYTES1

(2011) Laura T. Carney   JOURNAL OF PHYCOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Fast Identification and Removal of Sequence Contamination from Genomic and Metagenomic Datasets

(2011) Robert Schmieder et al.   PLoS One

Expression breadth and expression abundance behave differently in correlations with evolutionary rates

(2010) Seung Park et al.   BMC EVOLUTIONARY BIOLOGY

Habitat continuity and geographic distance predict population genetic differentiation in giant kelp

(2010) Filipe Alberto et al.   ECOLOGY

DNA BARCODING AND GENETIC DIVERGENCE IN THE GIANT KELP MACROCYSTIS (LAMINARIALES)1

(2010) Erasmo C. Macaya et al.   JOURNAL OF PHYCOLOGY

A multi-locus time-calibrated phylogeny of the brown algae (Heterokonta, Ochrophyta, Phaeophyceae): Investigating the evolutionary nature of the “brown algal crown radiation”

(2010) Thomas Silberfeld et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Ectocarpus genome and the independent evolution of multicellularity in brown algae

(2010) J. Mark Cock et al.   NATURE

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

The evolution of haploidy and diploidy

(2008) Sarah P. Otto et al.   CURRENT BIOLOGY