A Hierarchical Transcriptional Regulatory Network Required for Long-Term Thermal Stress Tolerance in an Industrial Saccharomyces cerevisiae Strain

Improved redox homeostasis owing to the up-regulation of one-carbon metabolism and related pathways is crucial for yeast heterosis at high temperature

(2021) Liang Song et al.   GENOME RESEARCH

Distinct Proteome Remodeling of Industrial Saccharomyces cerevisiae in Response to Prolonged Thermal Stress or Transient Heat Shock

(2018) Weidi Xiao et al.   JOURNAL OF PROTEOME RESEARCH

Engineering of global regulators and cell surface properties toward enhancing stress tolerance in Saccharomyces cerevisiae

(2017) Kouichi Kuroda et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Improvement of yeast tolerance to acetic acid through Haa1 transcription factor engineering: towards the underlying mechanisms

(2017) Steve Swinnen et al.   Microbial Cell Factories

Transcriptional profiling reveals molecular basis and novel genetic targets for improved resistance to multiple fermentation inhibitors in Saccharomyces cerevisiae

(2016) Yingying Chen et al.   Biotechnology for Biofuels

Reprogramming of nonfermentative metabolism by stress-responsive transcription factors in the yeast Saccharomyces cerevisiae

(2016) Nitnipa Soontorngun   CURRENT GENETICS

Advances in mechanisms and modifications for rendering yeast thermotolerance

(2016) Liman Gao et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Adaptation to different types of stress converge on mitochondrial metabolism

(2016) Petri-Jaan Lahtvee et al.   MOLECULAR BIOLOGY OF THE CELL

Past Roadblocks and New Opportunities in Transcription Factor Network Mapping

(2016) Michael R. Brent   TRENDS IN GENETICS

Engineering transcription factors to improve tolerance against alkane biofuels in Saccharomyces cerevisiae

(2015) Hua Ling et al.   Biotechnology for Biofuels

Exploiting the yeast stress-activated signaling network to inform on stress biology and disease signaling

(2015) Yi-Hsuan Ho et al.   CURRENT GENETICS

Understanding the Mechanism of Thermotolerance Distinct From Heat Shock Response Through Proteomic Analysis of Industrial Strains ofSaccharomyces cerevisiae

(2015) Wenqing Shui et al.   MOLECULAR & CELLULAR PROTEOMICS

A cytosolic network suppressing mitochondria-mediated proteostatic stress and cell death

(2015) Xiaowen Wang et al.   NATURE

Leveraging transcription factors to speed cellobiose fermentation by Saccharomyces cerevisiae

(2014) Yuping Lin et al.   Biotechnology for Biofuels

Altered sterol composition renders yeast thermotolerant

(2014) L. Caspeta et al.   SCIENCE

The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation inSaccharomyces cerevisiae

(2013) Miguel Cacho Teixeira et al.   NUCLEIC ACIDS RESEARCH

Yeast metabolic and signaling genes are required for heat-shock survival and have little overlap with the heat-induced genes

(2013) P. A. Gibney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Saccharomyces cerevisiae Genes Involved in Survival of Heat Shock

(2013) Stefanie Jarolim et al.   G3-Genes Genomes Genetics

Biology of the Heat Shock Response and Protein Chaperones: Budding Yeast (Saccharomyces cerevisiae) as a Model System

(2012) J. Verghese et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

TFRank: network-based prioritization of regulatory associations underlying transcriptional responses

(2011) Joana P. Gonçalves et al.   BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Regulation of chaperone gene expression by heat shock transcription factor inSaccharomyces cerevisiae: Importance in normal cell growth, stress resistance, and longevity

(2011) Hiroshi Sakurai et al.   FEBS LETTERS

The Response to Heat Shock and Oxidative Stress in Saccharomyces cerevisiae

(2011) K. A. Morano et al.   GENETICS

Genome-wide analysis of yeast stress survival and tolerance acquisition to analyze the central trade-off between growth rate and cellular robustness

(2011) Anna Zakrzewska et al.   MOLECULAR BIOLOGY OF THE CELL

Comparative transcriptome profiling analyses during the lag phase uncover YAP1, PDR1, PDR3, RPN4, and HSF1 as key regulatory genes in genomic adaptation to the lignocellulose derived inhibitor HMF for Saccharomyces cerevisiae

(2010) Menggen Ma et al.   BMC GENOMICS

The Rpd3L HDAC complex is essential for the heat stress response in yeast

(2010) Clàudia Ruiz-Roig et al.   MOLECULAR MICROBIOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

High-temperature fermentation: how can processes for ethanol production at high temperatures become superior to the traditional process using mesophilic yeast?

(2009) Babiker M. A. Abdel-Banat et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

(2009) Likun Wang et al.   BIOINFORMATICS

Evolutionary Conservation Levels of Subunits of Histone-Modifying Protein Complexes in Fungi

(2009) Hiromi Nishida   COMPARATIVE AND FUNCTIONAL GENOMICS

Transcriptional regulation of nonfermentable carbon utilization in budding yeast

(2009) Bernard Turcotte et al.   FEMS YEAST RESEARCH

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Combinatorial control of gene expression by the three yeast repressors Mig1, Mig2 and Mig3

(2008) Jakub Westholm et al.   BMC GENOMICS

Tuning gene expression to changing environments: from rapid responses to evolutionary adaptation

(2008) Luis López-Maury et al.   NATURE REVIEWS GENETICS

Genetic Interactions of MAF1 Identify a Role for Med20 in Transcriptional Repression of Ribosomal Protein Genes

(2008) Ian M. Willis et al.   PLoS Genetics