Transcriptional profiling reveals molecular basis and novel genetic targets for improved resistance to multiple fermentation inhibitors in Saccharomyces cerevisiae

Improved Acetic Acid Resistance in Saccharomyces cerevisiae by Overexpression of theWHI2Gene Identified through Inverse Metabolic Engineering

(2016) Yingying Chen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Improvement of acetic acid tolerance of Saccharomyces cerevisiae using a zinc-finger-based artificial transcription factor and identification of novel genes involved in acetic acid tolerance

(2015) Cui Ma et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Contribution of PRS3, RPB4 and ZWF1 to the resistance of industrial Saccharomyces cerevisiae CCUG53310 and PE-2 strains to lignocellulosic hydrolysate-derived inhibitors

(2015) Joana T. Cunha et al.   BIORESOURCE TECHNOLOGY

Adaptation of Scheffersomyces stipitis to hardwood spent sulfite liquor by evolutionary engineering

(2015) Susana R Pereira et al.   Biotechnology for Biofuels

Enhanced tolerance of Saccharomyces cerevisiae to multiple lignocellulose-derived inhibitors through modulation of spermidine contents

(2015) Sun-Ki Kim et al.   METABOLIC ENGINEERING

Proteomic analysis reveals complex metabolic regulation in Saccharomyces cerevisiae cells against multiple inhibitors stress

(2014) Ya-Jin Lv et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Simultaneously improving xylose fermentation and tolerance to lignocellulosic inhibitors through evolutionary engineering of recombinant Saccharomyces cerevisiae harbouring xylose isomerase

(2014) Justin Smith et al.   BMC BIOTECHNOLOGY

Microbial tolerance engineering toward biochemical production: from lignocellulose to products

(2014) Hua Ling et al.   CURRENT OPINION IN BIOTECHNOLOGY

Genome-wide screening of Saccharomyces cerevisiae genes required to foster tolerance towards industrial wheat straw hydrolysates

(2014) Francisco B. Pereira et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Transcription analysis of recombinant industrial and laboratory Saccharomyces cerevisiae strains reveals the molecular basis for fermentation of glucose and xylose

(2014) Akinori Matsushika et al.   Microbial Cell Factories

Re-assessment of YAP1 and MCR1 contributions to inhibitor tolerance in robust engineered Saccharomyces cerevisiae fermenting undetoxified lignocellulosic hydrolysate

(2014) Valeria Wallace-Salinas et al.   AMB Express

Transcriptional profiling of Saccharomyces cerevisiae T2 cells upon exposure to hardwood spent sulphite liquor: comparison to acetic acid, furfural and hydroxymethylfurfural

(2013) Paramjit K. Bajwa et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Roles of the Yap1 Transcription Factor and Antioxidants in Saccharomyces cerevisiae's Tolerance to Furfural and 5-Hydroxymethylfurfural, Which Function as Thiol-Reactive Electrophiles Generating Oxidative Stress

(2013) D. Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Evolutionary engineering ofSaccharomyces cerevisiaefor enhanced tolerance to hydrolysates of lignocellulosic biomass

(2013) María P. Almario et al.   BIOTECHNOLOGY AND BIOENGINEERING

Investigating host dependence of xylose utilization in recombinant Saccharomyces cerevisiae strains using RNA-seq analysis

(2013) Xueyang Feng et al.   Biotechnology for Biofuels

Pulsed addition of HMF and furfural to batch-grown xylose-utilizing Saccharomyces cerevisiae results in different physiological responses in glucose and xylose consumption phase

(2013) Magnus Ask et al.   Biotechnology for Biofuels

Bioconversion of lignocellulose: inhibitors and detoxification

(2013) Leif J Jönsson et al.   Biotechnology for Biofuels

Co-expression of TAL1 and ADH1 in recombinant xylose-fermenting Saccharomyces cerevisiae improves ethanol production from lignocellulosic hydrolysates in the presence of furfural

(2013) Tomohisa Hasunuma et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Rational and Evolutionary Engineering Approaches Uncover a Small Set of Genetic Changes Efficient for Rapid Xylose Fermentation in Saccharomyces cerevisiae

(2013) Soo Rin Kim et al.   PLoS One

Enhancement of Acetic Acid Tolerance in Saccharomyces cerevisiae by Overexpression of theHAA1Gene, Encoding a Transcriptional Activator

(2012) Koichi Tanaka et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metabolic engineering of Saccharomyces cerevisiae: a key cell factory platform for future biorefineries

(2012) Kuk-Ki Hong et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Opportunities for yeast metabolic engineering: Lessons from synthetic biology

(2011) Anastasia Krivoruchko et al.   Biotechnology Journal

Btrim: A fast, lightweight adapter and quality trimming program for next-generation sequencing technologies

(2011) Yong Kong   GENOMICS

Overexpression of the yeast transcription activator Msn2 confers furfural resistance and increases the initial fermentation rate in ethanol production

(2011) Yu Sasano et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Hemicelluloses

(2010) Henrik Vibe Scheller et al.   Annual Review of Plant Biology

Transcriptome shifts in response to furfural and acetic acid in Saccharomyces cerevisiae

(2010) Bing-Zhi Li et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Genome-wide identification of Saccharomyces cerevisiae genes required for tolerance to acetic acid

(2010) Nuno P Mira et al.   Microbial Cell Factories

Adaptive Response and Tolerance to Weak Acids in Saccharomyces cerevisiae: A Genome-Wide View

(2010) Nuno P. Mira et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Feedstocks for Lignocellulosic Biofuels

(2010) C. Somerville et al.   SCIENCE

Comparative Proteomic Analysis of Tolerance and Adaptation of Ethanologenic Saccharomyces cerevisiae to Furfural, a Lignocellulosic Inhibitory Compound

(2009) F.-M. Lin et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparison of glucose/xylose cofermentation of poplar hydrolysates processed by different pretreatment technologies

(2009) Yulin Lu et al.   BIOTECHNOLOGY PROGRESS

A novel NADPH-dependent aldehyde reductase gene from Saccharomyces cerevisiae NRRL Y-12632 involved in the detoxification of aldehyde inhibitors derived from lignocellulosic biomass conversion

(2009) Z. Lewis Liu et al.   GENE

Genome-Wide Identification of Genes Required for Yeast Growth Under Imatinib Stress: Vacuolar H+-ATPase Function Is an Important Target of This Anticancer Drug

(2009) Sandra C. dos Santos et al.   OMICS-A JOURNAL OF INTEGRATIVE BIOLOGY

Beneficial Biofuels--The Food, Energy, and Environment Trilemma

(2009) D. Tilman et al.   SCIENCE

Cellulosic Biofuels

(2008) Andrew Carroll et al.   Annual Review of Plant Biology

Regulation of xylose metabolism in recombinant Saccharomyces cerevisiae

(2008) Laura Salusjärvi et al.   Microbial Cell Factories

High-Quality Binary Protein Interaction Map of the Yeast Interactome Network

(2008) H. Yu et al.   SCIENCE