C-Glycoside metabolism in the gut and in nature: Identification, characterization, structural analyses and distribution of C-C bond-cleaving enzymes

Transition Metal-Mediated C-C Single Bond Cleavage: Making the Cut in Total Synthesis

(2020) Richmond Sarpong et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Discovery and mechanism of intestinal bacteria in enzymatic cleavage of C–C glycosidic bonds

(2020) Bin Wei et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Deglycosylation of isoflavone C-glucoside puerarin by combination of two recombinant bacterial enzymes and 3-oxo-glucose.

(2020) Kenichi Nakamura et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Plant Glycosides and Glycosidases: A Treasure-Trove for Therapeutics

(2020) Kassiani Kytidou et al.   Frontiers in Plant Science

A fully automated crystallization apparatus for small protein quantities

(2020) Ryuichi Kato et al.   Acta Crystallographica Section F-Structural Biology Communications

Expression and Characterization of the Human Intestinal Bacterial Enzyme Which Cleaves the C-Glycosidic Bond in 3″-Oxo-puerarin

(2019) Kenichi Nakamura et al.   BIOLOGICAL & PHARMACEUTICAL BULLETIN

Formation and Cleavage of C–C Bonds by Enzymatic Oxidation–Reduction Reactions

(2018) F. Peter Guengerich et al.   CHEMICAL REVIEWS

New tools for automated high-resolution cryo-EM structure determination in RELION-3

(2018) Jasenko Zivanov et al.   eLife

A Bayesian approach to beam-induced motion correction in cryo-EM single-particle analysis

(2018) Jasenko Zivanov et al.   IUCrJ

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy

(2017) Shawn Q Zheng et al.   NATURE METHODS

Chemical transformation of xenobiotics by the human gut microbiota

(2017) Nitzan Koppel et al.   SCIENCE

High-resolution Single Particle Analysis from Electron Cryo-microscopy Images Using SPHIRE

(2017) Toshio Moriya et al.   Jove-Journal of Visualized Experiments

Gctf: Real-time CTF determination and correction

(2016) Kai Zhang   JOURNAL OF STRUCTURAL BIOLOGY

Discovery of a sesamin-metabolizing microorganism and a new enzyme

(2016) Takuto Kumano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Glycosylation Is a Major Regulator of Phenylpropanoid Availability and Biological Activity in Plants

(2016) Julien Le Roy et al.   Frontiers in Plant Science

Directed Divergent Evolution of a ThermostableD-Tagatose Epimerase towards Improved Activity for Two Hexose Substrates

(2015) Andreas Bosshart et al.   CHEMBIOCHEM

Identification and functional expression of genes encoding flavonoidO- andC-glycosidases in intestinal bacteria

(2015) Annett Braune et al.   ENVIRONMENTAL MICROBIOLOGY

CTFFIND4: Fast and accurate defocus estimation from electron micrographs

(2015) Alexis Rohou et al.   JOURNAL OF STRUCTURAL BIOLOGY

Metabolic coupling of two small-molecule thiols programs the biosynthesis of lincomycin A

(2015) Qunfei Zhao et al.   NATURE

Characterization of two-step deglycosylation via oxidation by glycoside oxidoreductase and defining their subfamily

(2015) Eun-Mi Kim et al.   Scientific Reports

CTER—Rapid estimation of CTF parameters with error assessment

(2014) Pawel A. Penczek et al.   ULTRAMICROSCOPY

How good are my data and what is the resolution?

(2013) Philip R. Evans et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Identification of critical residues for the activity and thermostability of Streptomyces sp. SK glucose isomerase

(2013) Hajer Ben Hlima et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Structural Insights into the Epimerization of β-1,4-Linked Oligosaccharides Catalyzed by Cellobiose 2-Epimerase, the Sole Enzyme Epimerizing Non-anomeric Hydroxyl Groups of Unmodified Sugars

(2013) Takaaki Fujiwara et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Puerarin: A Review of Pharmacological Effects

(2013) Yan-Xi Zhou et al.   PHYTOTHERAPY RESEARCH

High-resolution noise substitution to measure overfitting and validate resolution in 3D structure determination by single particle electron cryomicroscopy

(2013) Shaoxia Chen et al.   ULTRAMICROSCOPY

Towards automated crystallographic structure refinement withphenix.refine

(2012) Pavel V. Afonine et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Intestinal Bacterium Eubacterium cellulosolvens Deglycosylates FlavonoidC-andO-Glucosides

(2012) Annett Braune et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prevention of overfitting in cryo-EM structure determination

(2012) Sjors H W Scheres et al.   NATURE METHODS

The C-Glucosyl Bond of Puerarin Was Cleaved Hydrolytically by a Human Intestinal Bacterium Strain PUE to Yield Its Aglycone Daidzein and an Intact Glucose

(2011) Kenichi Nakamura et al.   CHEMICAL & PHARMACEUTICAL BULLETIN

Discovery of the curcumin metabolic pathway involving a unique enzyme in an intestinal microorganism

(2011) A. Hassaninasab et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

XDS

(2010) Wolfgang Kabsch   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Deglycosylation of puerarin and other aromatic C-glucosides by a newly isolated human intestinal bacterium

(2010) Annett Braune et al.   ENVIRONMENTAL MICROBIOLOGY

Novel Isonitrile Hydratase Involved in Isonitrile Metabolism

(2010) Hiroyoshi Sato et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

electronic Ligand Builder and Optimization Workbench(eLBOW): a tool for ligand coordinate and restraint generation

(2009) Nigel W. Moriarty et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY