标题
Polarization of microbial communities between competitive and cooperative metabolism
作者
关键词
-
出版物
Nature Ecology & Evolution
Volume -, Issue -, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-01-05
DOI
10.1038/s41559-020-01353-4
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Extensive Unexplored Human Microbiome Diversity Revealed by Over 150,000 Genomes from Metagenomes Spanning Age, Geography, and Lifestyle
- (2019) Edoardo Pasolli et al. CELL
- Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems
- (2019) Alan R. Pacheco et al. Nature Communications
- antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline
- (2019) Kai Blin et al. NUCLEIC ACIDS RESEARCH
- Scientists’ warning to humanity: microorganisms and climate change
- (2019) Ricardo Cavicchioli et al. NATURE REVIEWS MICROBIOLOGY
- Common principles and best practices for engineering microbiomes
- (2019) Christopher E. Lawson et al. NATURE REVIEWS MICROBIOLOGY
- ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R
- (2018) Emmanuel Paradis et al. BIOINFORMATICS
- Ecology and evolution of metabolic cross-feeding interactions in bacteria
- (2018) Glen D'Souza et al. NATURAL PRODUCT REPORTS
- Current understanding of the human microbiome
- (2018) Jack A Gilbert et al. NATURE MEDICINE
- The social network of microorganisms — how auxotrophies shape complex communities
- (2018) Karsten Zengler et al. NATURE REVIEWS MICROBIOLOGY
- Fast automated reconstruction of genome-scale metabolic models for microbial species and communities
- (2018) Daniel Machado et al. NUCLEIC ACIDS RESEARCH
- Personalized Gut Mucosal Colonization Resistance to Empiric Probiotics Is Associated with Unique Host and Microbiome Features
- (2018) Niv Zmora et al. CELL
- Emergent simplicity in microbial community assembly
- (2018) Joshua E. Goldford et al. SCIENCE
- Changes in the genetic requirements for microbial interactions with increasing community complexity
- (2018) Manon Morin et al. eLife
- A communal catalogue reveals Earth’s multiscale microbial diversity
- (2017) Luke R. Thompson et al. NATURE
- Embracing the unknown: disentangling the complexities of the soil microbiome
- (2017) Noah Fierer NATURE REVIEWS MICROBIOLOGY
- SteadyCom: Predicting microbial abundances while ensuring community stability
- (2017) Siu Hung Joshua Chan et al. PLoS Computational Biology
- Yeast Creates a Niche for Symbiotic Lactic Acid Bacteria through Nitrogen Overflow
- (2017) Olga Ponomarova et al. Cell Systems
- Community structure follows simple assembly rules in microbial microcosms
- (2017) Jonathan Friedman et al. Nature Ecology & Evolution
- Spatial scale drives patterns in soil bacterial diversity
- (2016) Sarah L. O'Brien et al. ENVIRONMENTAL MICROBIOLOGY
- ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
- (2016) Jaime Huerta-Cepas et al. MOLECULAR BIOLOGY AND EVOLUTION
- Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
- (2016) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Cryptosporidium and Giardia taxa in faecal samples from animals in catchments supplying the city of Melbourne with drinking water (2011 to 2015)
- (2016) Anson V. Koehler et al. Parasites & Vectors
- Soil immune responses
- (2016) J. M. Raaijmakers et al. SCIENCE
- Decoupling function and taxonomy in the global ocean microbiome
- (2016) S. Louca et al. SCIENCE
- Experimental Evolution of Metabolic Dependency in Bacteria
- (2016) Glen D’Souza et al. PLoS Genetics
- Mutual Cross-Feeding Interactions between Bifidobacterium longum subsp. longum NCC2705 and Eubacterium rectale ATCC 33656 Explain the Bifidogenic and Butyrogenic Effects of Arabinoxylan Oligosaccharides
- (2015) Audrey Rivière et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Unraveling interactions in microbial communities - from co-cultures to microbiomes
- (2015) Justin Tan et al. JOURNAL OF MICROBIOLOGY
- Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
- (2015) Nuala A. O'Leary et al. NUCLEIC ACIDS RESEARCH
- Metabolic dependencies drive species co-occurrence in diverse microbial communities
- (2015) Aleksej Zelezniak et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Structure and function of the global ocean microbiome
- (2015) S. Sunagawa et al. SCIENCE
- The ecology of the microbiome: Networks, competition, and stability
- (2015) K. Z. Coyte et al. SCIENCE
- The Soil Microbiome Influences Grapevine-Associated Microbiota
- (2015) Iratxe Zarraonaindia et al. mBio
- Self-establishing communities enable cooperative metabolite exchange in a eukaryote
- (2015) Kate Campbell et al. eLife
- Syntrophic exchange in synthetic microbial communities
- (2014) M. T. Mee et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Longitudinal analysis of microbial interaction between humans and the indoor environment
- (2014) S. Lax et al. SCIENCE
- Replicating the microbial community and water quality performance of full-scale slow sand filters in laboratory-scale filters
- (2014) Sarah-Jane Haig et al. WATER RESEARCH
- Accurate and universal delineation of prokaryotic species
- (2013) Daniel R Mende et al. NATURE METHODS
- Community Flux Balance Analysis for Microbial Consortia at Balanced Growth
- (2013) Ruchir A. Khandelwal et al. PLoS One
- Metabolic modeling of species interaction in the human microbiome elucidates community-level assembly rules
- (2013) R. Levy et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Viral and Bacterial Interactions in the Upper Respiratory Tract
- (2013) Astrid A. T. M. Bosch et al. PLoS Pathogens
- Microbial diversity in arctic freshwaters is structured by inoculation of microbes from soils
- (2012) Byron C Crump et al. ISME Journal
- The human microbiome: at the interface of health and disease
- (2012) Ilseung Cho et al. NATURE REVIEWS GENETICS
- Molecular-based investigation of Cryptosporidium and Giardia from animals in water catchments in southeastern Australia
- (2012) Matthew J. Nolan et al. WATER RESEARCH
- The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss
- (2012) J. J. Morris et al. mBio
- OptCom: A Multi-Level Optimization Framework for the Metabolic Modeling and Analysis of Microbial Communities
- (2012) Ali R. Zomorrodi et al. PLoS Computational Biology
- Microbial Co-occurrence Relationships in the Human Microbiome
- (2012) Karoline Faust et al. PLoS Computational Biology
- Using network analysis to explore co-occurrence patterns in soil microbial communities
- (2011) Albert Barberán et al. ISME Journal
- Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
- (2011) F. Sievers et al. Molecular Systems Biology
- Enterotypes of the human gut microbiome
- (2011) Manimozhiyan Arumugam et al. NATURE
- Competitive and cooperative metabolic interactions in bacterial communities
- (2011) Shiri Freilich et al. Nature Communications
- phytools: an R package for phylogenetic comparative biology (and other things)
- (2011) Liam J. Revell Methods in Ecology and Evolution
- A global network of coexisting microbes from environmental and whole-genome sequence data
- (2010) S. Chaffron et al. GENOME RESEARCH
- Medically important bacterial–fungal interactions
- (2010) Anton Y. Peleg et al. NATURE REVIEWS MICROBIOLOGY
- The large-scale organization of the bacterial network of ecological co-occurrence interactions
- (2010) Shiri Freilich et al. NUCLEIC ACIDS RESEARCH
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- Evolutionary Systems Biology of Amino Acid Biosynthetic Cost in Yeast
- (2010) Michael D. Barton et al. PLoS One
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