Recruitment of an ancient branching program to suppress carpel development in maize flowers

The Role of Trehalose 6-Phosphate (Tre6P) in Plant Metabolism and Development

(2021) Franziska Fichtner et al.   Annual Review of Plant Biology

Conserved pleiotropy of an ancient plant homeobox gene uncovered by cis-regulatory dissection

(2021) Anat Hendelman et al.   CELL

IAA3-mediated repression of PIF proteins coordinates light and auxin signaling in Arabidopsis

(2021) Yulin Xi et al.   PLoS Genetics

Tiller Outgrowth in Rice (Oryza sativa L.) is Controlled by OsGT1, Which Acts Downstream of FC1 in a PhyB-Independent Manner

(2021) Vikranth Kumar et al.   JOURNAL OF PLANT BIOLOGY

Multiple independent recombinations led to hermaphroditism in grapevine

(2021) Cheng Zou et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional landscapes of floral meristems in barley

(2021) J. Thiel et al.   Science Advances

RAD51 supports DMC1 by inhibiting the SMC5/6 complex during meiosis

(2021) Hanchen Chen et al.   PLANT CELL

Arabidopsis group C Raf-like protein kinases negatively regulate abscisic acid signaling and are direct substrates of SnRK2

(2021) Yoshiaki Kamiyama et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

H3K27me3 demethylases alter HSP22 and HSP17.6C expression in response to recurring heat in Arabidopsis

(2021) Nobutoshi Yamaguchi et al.   Nature Communications

Arabidopsis thaliana trehalose-6-phosphate phosphatase gene TPPI enhances drought tolerance by regulating stomatal apertures

(2020) Qingfang Lin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Trehalose‐6‐phosphate phosphatase E modulates ABA‐controlled root growth and stomatal movement in Arabidopsis

(2020) Wenjing Wang et al.   Journal of Integrative Plant Biology

Arabidopsis FAR-RED ELONGATED HYPOCOTYL3 Integrates Age and Light Signals to Negatively Regulate Leaf Senescence

(2020) Tian Tian et al.   PLANT CELL

Reprogramming of Stem Cell Activity to Convert Thorns into Branches

(2020) Fei Zhang et al.   CURRENT BIOLOGY

A CYC/TB1-type TCP transcription factor controls spikelet meristem identity in barley

(2020) Yi Shang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Biochemical characterization of ClpB3, a chloroplastic disaggregase from Arabidopsis thaliana

(2020) Ivana L. Parcerisa et al.   PLANT MOLECULAR BIOLOGY

COMPOSITUM 1 contributes to the architectural simplification of barley inflorescence via meristem identity signals

(2020) Naser Poursarebani et al.   Nature Communications

Role of Raf-like kinases in SnRK2 activation and osmotic stress response in plants

(2020) Norma Fàbregas et al.   Nature Communications

SNF1-Related Protein Kinases SnRK2.4 and SnRK2.10 Modulate ROS Homeostasis in Plant Response to Salt Stress

(2019) Katarzyna Patrycja Szymańska et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Phosphoproteomics of Arabidopsis Highly ABA-Induced1 identifies AT-Hook–Like10 phosphorylation required for stress growth regulation

(2019) Min May Wong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BRANCHED1: A Key Hub of Shoot Branching

(2019) Ming Wang et al.   Frontiers in Plant Science

The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads

(2019) Yang Liao et al.   NUCLEIC ACIDS RESEARCH

Maize YABBY genes drooping leaf1 and drooping leaf2 regulate floret development and floral meristem determinacy

(2019) Josh Strable et al.   DEVELOPMENT

Integrated Genome-Scale Analysis Identifies Novel Genes and Networks Underlying Senescence in Maize

(2019) Rajandeep S Sekhon et al.   PLANT CELL

Of floral fortune: tinkering with the grain yield potential of cereal crops

(2019) Shun Sakuma et al.   NEW PHYTOLOGIST

SnRK2 protein kinases and mRNA decapping machinery control root development and response to salt

(2019) Dorota Kawa et al.   PLANT PHYSIOLOGY

Reconstructing the Transcriptional Ontogeny of Maize and Sorghum Supports an Inverse Hourglass Model of Inflorescence Development

(2019) Samuel Leiboff et al.   CURRENT BIOLOGY

The regulatory landscape of a core maize domestication module controlling bud dormancy and growth repression

(2019) Zhaobin Dong et al.   Nature Communications

Understanding the role of floral development in the evolution of angiosperm flowers: clarifications from a historical and physico-dynamic perspective

(2018) Louis Ronse De Craene   JOURNAL OF PLANT RESEARCH

SWISS-MODEL: homology modelling of protein structures and complexes

(2018) Andrew Waterhouse et al.   NUCLEIC ACIDS RESEARCH

A virus-targeted plant receptor-like kinase promotes cell-to-cell spread of RNAi

(2018) Tabata Rosas-Diaz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The papain-like cysteine protease CEP1 is involved in programmed cell death and secondary wall thickening during xylem development in Arabidopsis

(2018) Jingyi Han et al.   JOURNAL OF EXPERIMENTAL BOTANY

Interaction between row-type genes in barley controls meristem determinacy and reveals novel routes to improved grain

(2018) Monika Zwirek et al.   NEW PHYTOLOGIST

Grass inflorescence architecture and evolution: the origin of novel signaling centers

(2017) Clinton J. Whipple   NEW PHYTOLOGIST

Trehalose 6-phosphate is involved in triggering axillary bud outgrowth in garden pea (Pisum sativum L.)

(2017) Franziska Fichtner et al.   PLANT JOURNAL

Blue light and CO2 signals converge to regulate light-induced stomatal opening

(2017) Asami Hiyama et al.   Nature Communications

The Arabidopsis bZIP11 transcription factor links low-energy signalling to auxin-mediated control of primary root growth

(2017) Christoph Weiste et al.   PLoS Genetics

A Conserved Carbon Starvation Response Underlies Bud Dormancy in Woody and Herbaceous Species

(2017) Carlos Tarancón et al.   Frontiers in Plant Science

ConSurf 2016: an improved methodology to estimate and visualize evolutionary conservation in macromolecules

(2016) Haim Ashkenazy et al.   NUCLEIC ACIDS RESEARCH

Pectin Biosynthesis Is Critical for Cell Wall Integrity and Immunity in Arabidopsis thaliana

(2016) Gerit Bethke et al.   PLANT CELL

Trehalose 6-phosphate coordinates organic and amino acid metabolism with carbon availability

(2016) Carlos M. Figueroa et al.   PLANT JOURNAL

nana plant2 encodes a maize ortholog of the Arabidopsis brassinosteroid biosynthesis protein Dwarf1, identifying developmental interactions between brassinosteroids and gibberellins

(2016) Norman B Best et al.   PLANT PHYSIOLOGY

RNA-Seq Based Analysis of Population Structure within the Maize Inbred B73

(2016) Zhikai Liang et al.   PLoS One

Structures of trehalose-6-phosphate phosphatase from pathogenic fungi reveal the mechanisms of substrate recognition and catalysis

(2016) Yi Miao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Abscisic acid signaling is controlled by aBRANCHED1/HD-ZIP Icascade inArabidopsisaxillary buds

(2016) Eduardo González-Grandío et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels

(2015) Yongwook Choi et al.   BIOINFORMATICS

Iron-Dependent Callose Deposition Adjusts Root Meristem Maintenance to Phosphate Availability

(2015) Jens Müller et al.   DEVELOPMENTAL CELL

Reassess thetTest: Interact with All Your Data via ANOVA

(2015) Siobhan M. Brady et al.   PLANT CELL

Glycosylphosphatidylinositol-anchored proteins as chaperones and co-receptors for FERONIA receptor kinase signaling in Arabidopsis

(2015) Chao Li et al.   eLife

Characterization of the Maize Chitinase Genes and Their Effect on Aspergillus flavus and Aflatoxin Accumulation Resistance

(2015) Leigh K. Hawkins et al.   PLoS One

Overexpression of Mitochondrial Phosphate Transporter 3 Severely Hampers Plant Development through Regulating Mitochondrial Function in Arabidopsis

(2015) Fengjuan Jia et al.   PLoS One

GPT2: a glucose 6-phosphate/phosphate translocator with a novel role in the regulation of sugar signalling during seedling development

(2014) Beth C. Dyson et al.   ANNALS OF BOTANY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

A Plant Phosphoswitch Platform Repeatedly Targeted by Type III Effector Proteins Regulates the Output of Both Tiers of Plant Immune Receptors

(2014) Eui-Hwan Chung et al.   Cell Host & Microbe

The trehalose pathway in maize: conservation and gene regulation in response to the diurnal cycle and extended darkness

(2014) Clémence Henry et al.   JOURNAL OF EXPERIMENTAL BOTANY

The Cysteine Protease CEP1, a Key Executor Involved in Tapetal Programmed Cell Death, Regulates Pollen Development inArabidopsis

(2014) Dandan Zhang et al.   PLANT CELL

MaizeSBP-boxtranscription factorsunbranched2andunbranched3affect yield traits by regulating the rate of lateral primordia initiation

(2014) George S. Chuck et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A Y-chromosome-encoded small RNA acts as a sex determinant in persimmons

(2014) T. Akagi et al.   SCIENCE

Male Sterility and Fertility Restoration in Crops

(2013) Letian Chen et al.   Annual Review of Plant Biology

Trehalose Metabolism-Related Genes in Maize

(2013) Mei-Liang Zhou et al.   JOURNAL OF PLANT GROWTH REGULATION

Divergence of expression pattern contributed to neofunctionalization of duplicated HD-Zip I transcription factor in barley

(2013) Shun Sakuma et al.   NEW PHYTOLOGIST

Three Transcription Factors, HFR1, LAF1 and HY5, Regulate Largely Independent Signaling Pathways Downstream of Phytochrome A

(2013) In-Cheol Jang et al.   PLANT AND CELL PHYSIOLOGY

Six-rowed spike4 (Vrs4) controls spikelet determinacy and row-type in barley

(2013) R. Koppolu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Lateral root morphogenesis is dependent on the mechanical properties of the overlaying tissues

(2013) M. Lucas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

From Many, One: Genetic Control of Prolificacy during Maize Domestication

(2013) David M. Wills et al.   PLoS Genetics

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

ArabidopsisbZIP16 Transcription Factor Integrates Light and Hormone Signaling Pathways to Regulate Early Seedling Development

(2012) Wen-Ping Hsieh et al.   PLANT CELL

The Mitochondrial Phosphate Transporters Modulate Plant Responses to Salt Stress via Affecting ATP and Gibberellin Metabolism in Arabidopsis thaliana

(2012) Wei Zhu et al.   PLoS One

Identification of a plant aminopeptidase with preference for aromatic amino acid residues as a novel member of the prolyl oligopeptidase family of serine proteases

(2011) A. Tsuji et al.   JOURNAL OF BIOCHEMISTRY

The sucrose-regulated Arabidopsis transcription factor bZIP11 reprograms metabolism and regulates trehalose metabolism

(2011) Jingkun Ma et al.   NEW PHYTOLOGIST

Arabidopsis decuple mutant reveals the importance of SnRK2 kinases in osmotic stress responses in vivo

(2011) H. Fujii et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

grassy tillers1 promotes apical dominance in maize and responds to shade signals in the grasses

(2011) C. J. Whipple et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conserved Molecular Components for Pollen Tube Reception and Fungal Invasion

(2010) S. A. Kessler et al.   SCIENCE

Diversification of inflorescence development in the PCK clade (Poaceae: Panicoideae: Paniceae)

(2009) Renata Reinheimer et al.   AMERICAN JOURNAL OF BOTANY

Wind of change: new insights on the ecology and evolution of pollination and mating in wind-pollinated plants

(2009) Jannice Friedman et al.   ANNALS OF BOTANY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

FAR-RED ELONGATED HYPOCOTYL1 and FHY1-LIKE Associate with the Arabidopsis Transcription Factors LAF1 and HFR1 to Transmit Phytochrome A Signals for Inhibition of Hypocotyl Elongation

(2009) S. W. Yang et al.   PLANT CELL

bearded-ear Encodes a MADS Box Transcription Factor Critical for Maize Floral Development

(2009) B. E. Thompson et al.   PLANT CELL

Apyrase (Nucleoside Triphosphate-Diphosphohydrolase) and Extracellular Nucleotides Regulate Cotton Fiber Elongation in Cultured Ovules

(2009) G. Clark et al.   PLANT PHYSIOLOGY

tasselseed1 Is a Lipoxygenase Affecting Jasmonic Acid Signaling in Sex Determination of Maize

(2009) I. F. Acosta et al.   SCIENCE

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Trehalose Metabolism and Signaling

(2008) Matthew J. Paul et al.   Annual Review of Plant Biology

Floral meristem initiation and meristem cell fate are regulated by the maize AP2 genes ids1 and sid1

(2008) G. Chuck et al.   DEVELOPMENT