A Y-chromosome-encoded small RNA acts as a sex determinant in persimmons

A single female-specific piRNA is the primary determiner of sex in the silkworm

(2014) Takashi Kiuchi et al.   NATURE

Expansion of the Pseudo-autosomal Region and Ongoing Recombination Suppression in the Silene latifolia Sex Chromosomes

(2013) R. Bergero et al.   GENETICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular phylogenetics of New Caledonian Diospyros (Ebenaceae) using plastid and nuclear markers

(2013) Barbara Turner et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Divergence of expression pattern contributed to neofunctionalization of duplicated HD-Zip I transcription factor in barley

(2013) Shun Sakuma et al.   NEW PHYTOLOGIST

Early Disruption of Maternal-Zygotic Interaction and Activation of Defense-Like Responses in Arabidopsis Interspecific Crosses

(2013) D. Burkart-Waco et al.   PLANT CELL

PRICE: Software for the Targeted Assembly of Components of (Meta) Genomic Sequence Data

(2013) J. Graham Ruby et al.   G3-Genes Genomes Genetics

Comparative analysis of a plant pseudoautosomal region (PAR) in Silene latifolia with the corresponding S. vulgaris autosome

(2012) Nicolas Blavet et al.   BMC GENOMICS

Plant sex chromosome evolution

(2012) Deborah Charlesworth   JOURNAL OF EXPERIMENTAL BOTANY

Male-specific DNA markers provide genetic evidence of an XY chromosome system, a recombination arrest and allow the tracing of paternal lineages in date palm

(2012) Emira Cherif et al.   NEW PHYTOLOGIST

Rapid divergence and expansion of the X chromosome in papaya

(2012) A. R. Gschwend et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequencing papaya X and Yh chromosomes reveals molecular basis of incipient sex chromosome evolution

(2012) J. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sex Chromosomes in Land Plants

(2011) Ray Ming et al.   Annual Review of Plant Biology

Evolutionary transitions between mechanisms of sex determination in vertebrates

(2011) A. E. Quinn et al.   Biology Letters

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

A Versatile Set of Ligation-Independent Cloning Vectors for Functional Studies in Plants

(2011) B. De Rybel et al.   PLANT PHYSIOLOGY

Silene latifolia: The Classical Model to Study Heteromorphic Sex Chromosomes

(2010) E. Kejnovsky et al.   CYTOGENETIC AND GENOME RESEARCH

Dated molecular phylogenies indicate a Miocene origin for Arabidopsis thaliana

(2010) M. A. Beilstein et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Duplication of a well-conserved homeodomain-leucine zipper transcription factor gene in barley generates a copy with more specific functions

(2009) Shun Sakuma et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

A multi-locus plastid phylogenetic analysis of the pantropical genus Diospyros (Ebenaceae), with an emphasis on the radiation and biogeographic origins of the New Caledonian endemic species

(2009) Sutee Duangjai et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

DkMyb4 Is a Myb Transcription Factor Involved in Proanthocyanidin Biosynthesis in Persimmon Fruit

(2009) T. Akagi et al.   PLANT PHYSIOLOGY