mBodyMap: a curated database for microbes across human body and their associations with health and diseases

MicroPhenoDB Associates Metagenomic Data with Pathogenic Microbes, Microbial Core Genes, and Human Disease Phenotypes

(2021) Guocai Yao et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

Treatment regimens may compromise gut-microbiome-derived signatures for liver cirrhosis

(2021) Sicheng Wu et al.   Cell Metabolism

Human and preclinical studies of the host–gut microbiome co-metabolite hippurate as a marker and mediator of metabolic health

(2021) François Brial et al.   GUT

Metagenomic Analysis of Common Intestinal Diseases Reveals Relationships among Microbial Signatures and Powers Multidisease Diagnostic Models

(2021) Puzi Jiang et al.   mSystems

The hunt for a healthy microbiome

(2020) Michael Eisenstein   NATURE

Human Skin, Oral, and Gut Microbiomes Predict Chronological Age

(2020) Shi Huang et al.   mSystems

Host DNA contents in fecal metagenomics as a biomarker for intestinal diseases and effective treatment

(2020) Puzi Jiang et al.   BMC GENOMICS

Statin therapy is associated with lower prevalence of gut microbiota dysbiosis

(2020) Sara Vieira-Silva et al.   NATURE

The Gut Microbiota in Prediabetes and Diabetes: A Population-Based Cross-Sectional Study

(2020) Hao Wu et al.   Cell Metabolism

Diversity within species: interpreting strains in microbiomes

(2020) Thea Van Rossum et al.   NATURE REVIEWS MICROBIOLOGY

New Insights Into the Skin Microbial Communities and Skin Aging

(2020) Zichao Li et al.   Frontiers in Microbiology

Temporal Variation of the Facial Skin Microbiome: A 2-Year Longitudinal Study in Healthy Adults

(2020) Greg G. Hillebrand et al.   PLASTIC AND RECONSTRUCTIVE SURGERY

Antibiotics-induced monodominance of a novel gut bacterial order

(2019) Falk Hildebrand et al.   GUT

The Integrative Human Microbiome Project

(2019)   NATURE

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases

(2019) Jason Lloyd-Price et al.   NATURE

Meta-analysis of fecal metagenomes reveals global microbial signatures that are specific for colorectal cancer

(2019) Jakob Wirbel et al.   NATURE MEDICINE

GMrepo: a database of curated and consistently annotated human gut metagenomes

(2019) Sicheng Wu et al.   NUCLEIC ACIDS RESEARCH

Disbiome database: linking the microbiome to disease

(2018) Yorick Janssens et al.   BMC MICROBIOLOGY

Association Between Bacteremia From Specific Microbes and Subsequent Diagnosis of Colorectal Cancer

(2018) Thomas N.Y. Kwong et al.   GASTROENTEROLOGY

Population-level analysis ofBlastocystissubtype prevalence and variation in the human gut microbiota

(2018) Raul Y Tito et al.   GUT

Metagenomic analysis of gut microbial communities from a Central Asian population

(2018) Almagul Kushugulova et al.   BMJ Open

The European Nucleotide Archive in 2018

(2018) Peter W Harrison et al.   NUCLEIC ACIDS RESEARCH

Comparison of gut microbiota in adult patients with type 2 diabetes and healthy individuals

(2017) Mansour Sedighi et al.   MICROBIAL PATHOGENESIS

Metformin alters the gut microbiome of individuals with treatment-naive type 2 diabetes, contributing to the therapeutic effects of the drug

(2017) Hao Wu et al.   NATURE MEDICINE

MVP: a microbe–phage interaction database

(2017) Na L Gao et al.   NUCLEIC ACIDS RESEARCH

A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients

(2017) Andrew Brantley Hall et al.   Genome Medicine

An analysis of human microbe–disease associations

(2016) Wei Ma et al.   BRIEFINGS IN BIOINFORMATICS

Gut microbiome in health and disease: Linking the microbiome–gut–brain axis and environmental factors in the pathogenesis of systemic and neurodegenerative diseases

(2016) Shivani Ghaisas et al.   PHARMACOLOGY & THERAPEUTICS

Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity

(2016) Alexandra Zhernakova et al.   SCIENCE

Gut Microbiota Linked to Sexual Preference and HIV Infection

(2016) Marc Noguera-Julian et al.   EBioMedicine

Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota

(2015) Kristoffer Forslund et al.   NATURE

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

CASPER: context-aware scheme for paired-end reads from high-throughput amplicon sequencing

(2014) Sunyoung Kwon et al.   BMC BIOINFORMATICS

Intestinal microbiota in health and disease: Role of bifidobacteria in gut homeostasis

(2014) Rafael Tojo   WORLD JOURNAL OF GASTROENTEROLOGY

Microbial genomic analysis reveals the essential role of inflammation in bacteria-induced colorectal cancer

(2014) Janelle C. Arthur et al.   Nature Communications

Microbes and Inflammation in Colorectal Cancer

(2013) A. D. Kostic et al.   Cancer Immunology Research

The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites

(2012) Luke K. Ursell et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

A metagenome-wide association study of gut microbiota in type 2 diabetes

(2012) Junjie Qin et al.   NATURE

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

Metagenomic microbial community profiling using unique clade-specific marker genes

(2012) Nicola Segata et al.   NATURE METHODS

The human microbiome: at the interface of health and disease

(2012) Ilseung Cho et al.   NATURE REVIEWS GENETICS

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment

(2012) Xochitl C Morgan et al.   GENOME BIOLOGY

The sequence read archive: explosive growth of sequencing data

(2011) Y. Kodama et al.   NUCLEIC ACIDS RESEARCH

Moving pictures of the human microbiome

(2011) J Gregory Caporaso et al.   GENOME BIOLOGY

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE