Ancient Egyptian mummy genomes suggest an increase of Sub-Saharan African ancestry in post-Roman periods

Pleistocene Mitochondrial Genomes Suggest a Single Major Dispersal of Non-Africans and a Late Glacial Population Turnover in Europe

(2016) Cosimo Posth et al.   CURRENT BIOLOGY

Genomic insights into the origin of farming in the ancient Near East

(2016) Iosif Lazaridis et al.   NATURE

HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing

(2016) Hansi Weissensteiner et al.   NUCLEIC ACIDS RESEARCH

Migration Route Out of Africa Unresolved by 225 Egyptian and Ethiopian Whole Genome Sequences

(2016) Daniel Shriner et al.   Frontiers in Genetics

Comparing maternal genetic variation across two millennia reveals the demographic history of an ancient human population in southwest Turkey

(2016) Claudio Ottoni et al.   Royal Society Open Science

Tracing the Route of Modern Humans out of Africa by Using 225 Human Genome Sequences from Ethiopians and Egyptians

(2015) Luca Pagani et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Automatic selection of partitioning schemes for phylogenetic analyses using iterative k-means clustering of site rates

(2015) Paul B Frandsen et al.   BMC EVOLUTIONARY BIOLOGY

Genome-wide patterns of selection in 230 ancient Eurasians

(2015) Iain Mathieson et al.   NATURE

Massive migration from the steppe was a source for Indo-European languages in Europe

(2015) Wolfgang Haak et al.   NATURE

An early modern human from Romania with a recent Neanderthal ancestor

(2015) Qiaomei Fu et al.   NATURE

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

Ancient human genomes suggest three ancestral populations for present-day Europeans

(2014) Iosif Lazaridis et al.   NATURE

The Impact of Modelling Rate Heterogeneity among Sites on Phylogenetic Estimates of Intraspecific Evolutionary Rates and Timescales

(2014) Fangzhi Jia et al.   PLoS One

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

(2013) Hákon Jónsson et al.   BIOINFORMATICS

Inferring Admixture Histories of Human Populations Using Linkage Disequilibrium

(2013) P.-R. Loh et al.   GENETICS

First insights into the metagenome of Egyptian mummies using next-generation sequencing

(2013) Rabab Khairat et al.   JOURNAL OF APPLIED GENETICS

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

(2013) Maanasa Raghavan et al.   NATURE

Molecular Identification of Falciparum Malaria and Human Tuberculosis Co-Infections in Mummies from the Fayum Depression (Lower Egypt)

(2013) Albert Lalremruata et al.   PLoS One

DNA analysis of an early modern human from Tianyuan Cave, China

(2013) Q. Fu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

(2013) J. Dabney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancient DNA Reveals Key Stages in the Formation of Central European Mitochondrial Genetic Diversity

(2013) G. Brandt et al.   SCIENCE

Ancient Admixture in Human History

(2012) N. Patterson et al.   GENETICS

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Genomic Ancestry of North Africans Supports Back-to-Africa Migrations

(2012) Brenna M. Henn et al.   PLoS Genetics

Enlightening the past: Analytical proof for the use of Pistacia exudates in ancient Egyptian embalming resins

(2011) Tim M. Nicholson et al.   JOURNAL OF SEPARATION SCIENCE

Learning about human population history from ancient and modern genomes

(2011) Mark Stoneking et al.   NATURE REVIEWS GENETICS

Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform

(2011) Martin Kircher et al.   NUCLEIC ACIDS RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

King Tutankhamun’s Family and Demise

(2010) Eline D. Lorenzen   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Ancestry and Pathology in King Tutankhamun's Family

(2010) Zahi Hawass   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

Multiplexed DNA Sequence Capture of Mitochondrial Genomes Using PCR Products

(2010) Tomislav Maricic et al.   PLoS One

Near Eastern Neolithic genetic input in a small oasis of the Egyptian Western Desert

(2009) Martina Kujanová et al.   AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA

(2009) Adrian W. Briggs et al.   NUCLEIC ACIDS RESEARCH