Yleaf: Software for Human Y-Chromosomal Haplogroup Inference from Next-Generation Sequencing Data

Human Y-chromosome variation in the genome-sequencing era

(2017) Mark A. Jobling et al.   NATURE REVIEWS GENETICS

Human Y Chromosome Haplogroup N: A Non-trivial Time-Resolved Phylogeography that Cuts across Language Families

(2016) Anne-Mai Ilumäe et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences

(2016) G David Poznik et al.   NATURE GENETICS

Long-term genetic stability and a high-altitude East Asian origin for the peoples of the high valleys of the Himalayan arc

(2016) Choongwon Jeong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Early farmers from across Europe directly descended from Neolithic Aegeans

(2016) Zuzana Hofmanová et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Early Neolithic genomes from the eastern Fertile Crescent

(2016) Farnaz Broushaki et al.   SCIENCE

Genomic signals of migration and continuity in Britain before the Anglo-Saxons

(2016) Rui Martiniano et al.   Nature Communications

Extensive sequencing of seven human genomes to characterize benchmark reference materials

(2016) Justin M. Zook et al.   Scientific Data

A global reference for human genetic variation

(2015) Richard A. Gibbs et al.   NATURE

Ancient Ethiopian genome reveals extensive Eurasian admixture in Eastern Africa

(2015) M. Gallego Llorente et al.   SCIENCE

Simultaneous Analysis of Hundreds of Y-Chromosomal SNPs for High-Resolution Paternal Lineage Classification using Targeted Semiconductor Sequencing

(2014) Arwin Ralf et al.   HUMAN MUTATION

The Y-Chromosome Tree Bursts into Leaf: 13,000 High-Confidence SNPs Covering the Majority of Known Clades

(2014) P. Hallast et al.   MOLECULAR BIOLOGY AND EVOLUTION

AMY-tree: an algorithm to use whole genome SNP calling for Y chromosomal phylogenetic applications

(2013) Anneleen Van Geystelen et al.   BMC GENOMICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Ancient human genome sequence of an extinct Palaeo-Eskimo

(2010) Morten Rasmussen et al.   NATURE

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS