Benchmark Test and Guidelines for DEER/PELDOR Experiments on Nitroxide-Labeled Biomolecules

Going the dHis-tance: Site-Directed Cu2+ Labeling of Proteins and Nucleic Acids

(2021) Austin Gamble Jarvi et al.   ACCOUNTS OF CHEMICAL RESEARCH

DEER-PREdict: Software for efficient calculation of spin-labeling EPR and NMR data from conformational ensembles

(2021) Giulio Tesei et al.   PLoS Computational Biology

NMR and EPR reveal a compaction of the RNA-binding protein FUS upon droplet formation

(2021) Leonidas Emmanouilidis et al.   Nature Chemical Biology

Spatiotemporal Resolution of Conformational Changes in Biomolecules by Combining Pulsed Electron–Electron Double Resonance Spectroscopy with Microsecond Freeze-Hyperquenching

(2021) Tobias Hett et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Characterization of Weak Protein Domain Structure by Spin-Label Distance Distributions

(2021) Irina Ritsch et al.   Frontiers in Molecular Biosciences

SLIM: A Short‐Linked, Highly Redox‐Stable Trityl Label for High‐Sensitivity In‐Cell EPR Distance Measurements

(2020) Nico Fleck et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Submillisecond Freezing Permits Cryoprotectant‐Free EPR Double Electron−Electron Resonance Spectroscopy

(2020) Thomas Schmidt et al.   CHEMPHYSCHEM

Quantitative Structure-Based Prediction of Electron Spin Decoherence in Organic Radicals

(2020) Elizabeth R. Canarie et al.   Journal of Physical Chemistry Letters

The Multidrug Transporter MdfA Deviates from the Canonical Model of Alternating Access of MFS Transporters

(2020) Eliane H. Yardeni et al.   JOURNAL OF MOLECULAR BIOLOGY

Thermodynamic Basis for Conformational Coupling in an ATP-Binding Cassette Exporter

(2020) Katja Barth et al.   Journal of Physical Chemistry Letters

MMM : Integrative ensemble modeling and ensemble analysis

(2020) Gunnar Jeschke   PROTEIN SCIENCE

Light-Induced Triplet–Triplet Electron Resonance Spectroscopy

(2020) Arnau Bertran et al.   Journal of Physical Chemistry Letters

ATP-induced asymmetric pre-protein folding as a driver of protein translocation through the Sec machinery

(2019) Robin A Corey et al.   eLife

Mechanism of allosteric modulation of P-glycoprotein by transport substrates and inhibitors

(2019) Reza Dastvan et al.   SCIENCE

Studying Conformational Changes of the Yersinia Type-III-Secretion Effector YopO in Solution by Integrative Structural Biology

(2019) Martin F. Peter et al.   STRUCTURE

Pulsed EPR Dipolar Spectroscopy on Spin Pairs with one Highly Anisotropic Spin Center: The Low‐Spin Fe III Case

(2019) Dinar Abdullin et al.   CHEMISTRY-A EUROPEAN JOURNAL

EPR Distance Measurements as a Tool to Characterize Protein‐DNA Interactions

(2019) Hila Sameach et al.   ISRAEL JOURNAL OF CHEMISTRY

SASBDB: Towards an automatically curated and validated repository for biological scattering data

(2019) Alexey G. Kikhney et al.   PROTEIN SCIENCE

Allosteric activation of an ion channel triggered by modification of mechanosensitive nano-pockets

(2019) Charalampos Kapsalis et al.   Nature Communications

Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures

(2019) Helen M. Berman et al.   STRUCTURE

A facile approach for the in vitro assembly of multimeric membrane transport proteins

(2018) Erika A Riederer et al.   eLife

Confidence Analysis of DEER Data and Its Structural Interpretation with Ensemble-Biased Metadynamics

(2018) Eric J. Hustedt et al.   BIOPHYSICAL JOURNAL

Precision and accuracy of single-molecule FRET measurements—a multi-laboratory benchmark study

(2018) Björn Hellenkamp et al.   NATURE METHODS

Deep neural network processing of DEER data

(2018) Steven G. Worswick et al.   Science Advances

Singular Value Decomposition Method To Determine Distance Distributions in Pulsed Dipolar Electron Spin Resonance: II. Estimating Uncertainty

(2018) Madhur Srivastava et al.   JOURNAL OF PHYSICAL CHEMISTRY A

Structural Characterization of Biomolecules through Atomistic Simulations Guided by DEER Measurements

(2018) Fabrizio Marinelli et al.   STRUCTURE

Singular Value Decomposition Method to Determine Distance Distributions in Pulsed Dipolar Electron Spin Resonance

(2017) Madhur Srivastava et al.   Journal of Physical Chemistry Letters

Energy transduction and alternating access of the mammalian ABC transporter P-glycoprotein

(2017) Brandy Verhalen et al.   NATURE

Conformational equilibria of light-activated rhodopsin in nanodiscs

(2017) Ned Van Eps et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

MMM: A toolbox for integrative structure modeling

(2017) Gunnar Jeschke   PROTEIN SCIENCE

Exploring conformational equilibria of a heterodimeric ABC transporter

(2017) M Hadi Timachi et al.   eLife

2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update

(2017) Jill Trewhella et al.   Acta Crystallographica Section D-Structural Biology

Long Distance Measurements up to 160 Å in the GroEL Tetradecamer Using Q-Band DEER EPR Spectroscopy

(2016) Thomas Schmidt et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

A Bayesian approach to quantifying uncertainty from experimental noise in DEER spectroscopy

(2016) Thomas H. Edwards et al.   JOURNAL OF MAGNETIC RESONANCE

Determination of nitroxide spin label conformations via PELDOR and X-ray crystallography

(2016) D. Abdullin et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Rotameric preferences of a protein spin label at edge-strand β-sheet sites

(2016) Timothy F. Cunningham et al.   PROTEIN SCIENCE

Characterization of the Domain Orientations of E. coli 5′-Nucleotidase by Fitting an Ensemble of Conformers to DEER Distance Distributions

(2016) Ulrike Krug et al.   STRUCTURE

Dependence of Distance Distributions Derived from Double Electron-Electron Resonance Pulsed EPR Spectroscopy on Pulse-Sequence Time

(2015) James L. Baber et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Simulating the Distance Distribution between Spin-Labels Attached to Proteins

(2015) Shahidul M. Islam et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Yersinia effector YopO uses actin as bait to phosphorylate proteins that regulate actin polymerization

(2015) Wei Lin Lee et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Yersinia effector YopO uses actin as bait to phosphorylate proteins that regulate actin polymerization

(2015) Wei Lin Lee et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The spatial effect of protein deuteration on nitroxide spin-label relaxation: Implications for EPR distance measurement

(2014) Hassane El Mkami et al.   JOURNAL OF MAGNETIC RESONANCE

Structural Model of Active Bax at the Membrane

(2014) Stephanie Bleicken et al.   MOLECULAR CELL

Structural basis of the non-coding RNA RsmZ acting as a protein sponge

(2014) Olivier Duss et al.   NATURE

Double electron–electron resonance reveals cAMP-induced conformational change in HCN channels

(2014) Michael C. Puljung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Determining the Oligomeric Structure of Proteorhodopsin by Gd3+-Based Pulsed Dipolar Spectroscopy of Multiple Distances

(2014) Devin T. Edwards et al.   STRUCTURE

Long-Range Distances in Amyloid Fibrils of α-Synuclein from PELDOR Spectroscopy

(2013) S. Pornsuwan et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Cooperative Unfolding of Compact Conformations of the Intrinsically Disordered Protein Osteopontin

(2013) Dennis Kurzbach et al.   BIOCHEMISTRY

Technological advances in site-directed spin labeling of proteins

(2013) Wayne L Hubbell et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Modeling Excluded Volume Effects for the Faithful Description of the Background Signal in Double Electron–Electron Resonance

(2013) Daniel R. Kattnig et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Suppression of ghost distances in multiple-spin double electron–electron resonance

(2013) Tona von Hagens et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Gd3+ spin labeling for distance measurements by pulse EPR spectroscopy

(2013) Daniella Goldfarb   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution

(2012) David A. Jacques et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

DEER Distance Measurements on Proteins

(2012) Gunnar Jeschke   Annual Review of Physical Chemistry

Site-Directed Spin Labelling of Nucleic Acids

(2012) Sandip A. Shelke et al.   EUROPEAN JOURNAL OF ORGANIC CHEMISTRY

Effect of freezing conditions on distances and their distributions derived from Double Electron Electron Resonance (DEER): A study of doubly-spin-labeled T4 lysozyme

(2012) Elka R. Georgieva et al.   JOURNAL OF MAGNETIC RESONANCE

Simulating the Dynamics and Orientations of Spin-Labeled Side Chains in a Protein–DNA Complex

(2012) Jessica L. Sarver et al.   JOURNAL OF PHYSICAL CHEMISTRY B

High sensitivity and versatility of the DEER experiment on nitroxide radical pairs at Q-band frequencies

(2012) Yevhen Polyhach et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Solution Structure of the ESCRT-I and -II Supercomplex: Implications for Membrane Budding and Scission

(2012) Evzen Boura et al.   STRUCTURE

DEER in biological multispin-systems: A case study on the fatty acid binding to human serum albumin

(2011) Matthias J.N. Junk et al.   JOURNAL OF MAGNETIC RESONANCE

Dead-time free measurement of dipole–dipole interactions between electron spins

(2011) M. Pannier et al.   JOURNAL OF MAGNETIC RESONANCE

Toward the Fourth Dimension of Membrane Protein Structure: Insight into Dynamics from Spin-Labeling EPR Spectroscopy

(2011) Hassane S. Mchaourab et al.   STRUCTURE

Shigella flexneri Spa15 Crystal Structure Verified in Solution by Double Electron Electron Resonance

(2010) James E.D. Lillington et al.   JOURNAL OF MOLECULAR BIOLOGY

Optimization of Transversal Relaxation of Nitroxides for Pulsed Electron−Electron Double Resonance Spectroscopy in Phospholipid Membranes

(2010) Reza Dastvan et al.   JOURNAL OF PHYSICAL CHEMISTRY B

RNA-Binding to Archaeal RNA Polymerase Subunits F/E: A DEER and FRET Study

(2010) Dina Grohmann et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Rotamer libraries of spin labelled cysteines for protein studies

(2010) Yevhen Polyhach et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

PELDOR Spectroscopy Distance Fingerprinting of the Octameric Outer-Membrane Protein Wza from Escherichia coli.

(2009) Gregor Hagelueken et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Relative Orientation of Rigid Nitroxides by PELDOR: Beyond Distance Measurements in Nucleic Acids

(2009) Olav Schiemann et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Pulsed Electron−Electron Double-Resonance Determination of Spin-Label Distances and Orientations on the Tetrameric Potassium Ion Channel KcsA

(2009) Burkhard Endeward et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Three-spin correlations in double electron–electron resonance

(2009) Gunnar Jeschke et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Ferro- and antiferromagnetic exchange coupling constants in PELDOR spectra

(2009) D. Margraf et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Site-directed spin labeling of a genetically encoded unnatural amino acid

(2009) M. R. Fleissner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Distance measurements in the borderline region of applicability of CW EPR and DEER: A model study on a homologous series of spin-labelled peptides

(2008) J.E. Banham et al.   JOURNAL OF MAGNETIC RESONANCE