Seasonal variations in the composition and functional profiles of gut microbiota reflect dietary changes in plateau pikas

Environmental stress destabilizes microbial networks

(2021) Damian J. Hernandez et al.   ISME Journal

Diet, habitat environment and lifestyle conversion affect the gut microbiomes of giant pandas

(2021) Leijin et al.   SCIENCE OF THE TOTAL ENVIRONMENT

The plant secondary compound swainsonine reshapes gut microbiota in plateau pikas (Ochotona curzoniae)

(2021) Shien Ren et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Berberine, a potential prebiotic to indirectly promote Akkermansia growth through stimulating gut mucin secretion

(2021) Chaoran Dong et al.   BIOMEDICINE & PHARMACOTHERAPY

Dispersal strategies shape persistence and evolution of human gut bacteria

(2021) Falk Hildebrand et al.   Cell Host & Microbe

Prevotella diversity, niches and interactions with the human host

(2021) Adrian Tett et al.   NATURE REVIEWS MICROBIOLOGY

Surviving winter on the Qinghai-Tibetan Plateau: Pikas suppress energy demands and exploit yak feces to survive winter

(2021) John R. Speakman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Seasonal Shifts in Cold Tolerance and the Composition of the Gut Microbiome of Dendroctonus valens LeConte Occur Concurrently

(2021) Zehai Hou et al.   Forests

Comparative study of growth performance, nutrient digestibility, and ruminal and fecal bacterial community between yaks and cattle-yaks raised by stall-feeding

(2021) Qindan Dai et al.   AMB Express

Metagenomic analysis reveals the microbiome and resistome in migratory birds

(2020) Jian Cao et al.   Microbiome

Effects of spaceflight on the composition and function of the human gut microbiota

(2020) Zizhong Liu et al.   Gut Microbes

Host-microbiota interaction helps to explain the bottom-up effects of climate change on a small rodent species

(2020) Guoliang Li et al.   ISME Journal

Environmental remodeling of human gut microbiota and antibiotic resistome in livestock farms

(2020) Jian Sun et al.   Nature Communications

Gut microbial diversity and stabilizing functions enhance the plateau adaptability of Tibetan wild ass ( Equus kiang )

(2020) Hongmei Gao et al.   MicrobiologyOpen

Metagenomic insights into the diversity of carbohydrate-degrading enzymes in the yak fecal microbial community

(2020) Ga Gong et al.   BMC MICROBIOLOGY

Gut Microbiota and Host Thermoregulation in Response to Ambient Temperature Fluctuations

(2020) Saeid Khakisahneh et al.   mSystems

Bacterial dispersal and drift drive microbiome diversity patterns within a population of feral hindgut fermenters

(2020) Mason R. Stothart et al.   MOLECULAR ECOLOGY

Gut Microbiota in Dholes During Estrus

(2020) Xiaoyang Wu et al.   Frontiers in Microbiology

Environment and host species identity shape gut microbiota diversity in sympatric herbivorous mammals

(2020) Haibo Fu et al.   Microbial Biotechnology

Increasing environmental filtering of diazotrophic communities with a decade of latitudinal soil transplantation

(2020) Haoqi Tang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Metagenomic reconstructions of gut microbial metabolism in weanling pigs

(2019) Weilan Wang et al.   Microbiome

Sequence and cultivation study of Muribaculaceae reveals novel species, host preference, and functional potential of this yet undescribed family

(2019) Ilias Lagkouvardos et al.   Microbiome

The Koala (Phascolarctos cinereus) faecal microbiome differs with diet in a wild population

(2019) Kylie L. Brice et al.   PeerJ

Mammographic breast density and its association with urinary estrogens and the fecal microbiota in postmenopausal women

(2019) Gieira S. Jones et al.   PLoS One

Fecal microbiota dysbiosis in macaques and humans within a shared environment

(2019) Erica T. Grant et al.   PLoS One

Environmental filtering increases with elevation for the assembly of gut microbiota in wild pikas

(2019) Huan Li et al.   Microbial Biotechnology

Distinct impact of antibiotics on the gut microbiome and resistome: a longitudinal multicenter cohort study

(2019) Matthias Willmann et al.   BMC BIOLOGY

Seasonal Changes in Gut Microbiota Diversity and Composition in the Greater Horseshoe Bat

(2019) Guohong Xiao et al.   Frontiers in Microbiology

Gut microbiota structure differs between honeybees in winter and summer

(2019) Lucie Kešnerová et al.   ISME Journal

Effects of Seasonal Hibernation on the Similarities Between the Skin Microbiota and Gut Microbiota of an Amphibian (Rana dybowskii)

(2019) Qing Tong et al.   MICROBIAL ECOLOGY

OUP accepted manuscript

(2018)   BIOINFORMATICS

Functional-trait ecology of the plateau pika Ochotona curzoniae (Hodgson, 1858) in the Qinghai-Tibetan Plateau ecosystem

(2018) Andrew T. SMITH et al.   Integrative Zoology

Biological and climate factors co-regulated spatial-temporal dynamics of vegetation autumn phenology on the Tibetan Plateau

(2018) Jiaxing Zu et al.   International Journal of Applied Earth Observation and Geoinformation

Gut microbiota promotes production of aromatic metabolites through degradation of barley leaf fiber

(2018) Daotong Li et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

Huddling remodels gut microbiota to reduce energy requirements in a small mammal species during cold exposure

(2018) Xue-Ying Zhang et al.   Microbiome

Seasonality of the gut microbiota of free-ranging white-faced capuchins in a tropical dry forest

(2018) Joseph D. Orkin et al.   ISME Journal

Effect of A Polyphenol-Rich Canarium album Extract on the Composition of the Gut Microbiota of Mice Fed a High-Fat Diet

(2018) Ning-Ning Zhang et al.   MOLECULES

Variations in Gut Microbiota of Siberian Flying Squirrels Correspond to Seasonal Phenological Changes in Their Hokkaido Subarctic Forest Ecosystem

(2018) Po-Yu Liu et al.   MICROBIAL ECOLOGY

Spatiotemporal variations of the start of thermal growing season for grassland on the Qinghai-Tibetan Plateau during 1961–2014

(2017) Wenquan Zhu et al.   INTERNATIONAL JOURNAL OF BIOMETEOROLOGY

25 years of serving the community with ribosomal RNA gene reference databases and tools

(2017) Frank Oliver Glöckner et al.   JOURNAL OF BIOTECHNOLOGY

The environmental and host-associated bacterial microbiota of Arctic seawater-farmed Atlantic salmon with ulcerative disorders

(2017) C Karlsen et al.   JOURNAL OF FISH DISEASES

Seasonal cycling in the gut microbiome of the Hadza hunter-gatherers of Tanzania

(2017) Samuel A. Smits et al.   SCIENCE

Climate warming reduces gut microbiota diversity in a vertebrate ectotherm

(2017) Elvire Bestion et al.   Nature Ecology & Evolution

Seasonal soil microbial responses are limited to changes in functionality at two Alpine forest sites differing in altitude and vegetation

(2017) José A. Siles et al.   Scientific Reports

Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota

(2016) Stefanía Magnúsdóttir et al.   NATURE BIOTECHNOLOGY

Inter- and intra-individual variations in seasonal and daily stabilities of the human gut microbiota in Japanese

(2015) Takayoshi Hisada et al.   ARCHIVES OF MICROBIOLOGY

Marked seasonal variation in the wild mouse gut microbiota

(2015) Corinne F Maurice et al.   ISME Journal

Exercise and associated dietary extremes impact on gut microbial diversity

(2014) Siobhan F Clarke et al.   GUT

Effect of Swainsonine in Oxytropis kansuensis on Golgi α-Mannosidase II Expression in the Brain Tissues of Sprague–Dawley Rats

(2014) Hao Lu et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

The Gut Microbiota Appears to Compensate for Seasonal Diet Variation in the Wild Black Howler Monkey (Alouatta pigra)

(2014) Katherine R. Amato et al.   MICROBIAL ECOLOGY

Hibernation alters the diversity and composition of mucosa-associated bacteria while enhancing antimicrobial defence in the gut of 13-lined ground squirrels

(2014) Kimberly A. Dill-McFarland et al.   MOLECULAR ECOLOGY

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

ForceAtlas2, a Continuous Graph Layout Algorithm for Handy Network Visualization Designed for the Gephi Software

(2014) Mathieu Jacomy et al.   PLoS One

Gut metagenome in European women with normal, impaired and diabetic glucose control

(2013) Fredrik H. Karlsson et al.   NATURE

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Seasonal restructuring of the ground squirrel gut microbiota over the annual hibernation cycle

(2012) Hannah V. Carey et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Reproduction of plateau pika (Ochotona curzoniae) on the Qinghai–Tibetan plateau

(2011) Jiapeng Qu et al.   EUROPEAN JOURNAL OF WILDLIFE RESEARCH

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

Bacterial community structures are unique and resilient in full-scale bioenergy systems

(2011) J. J. Werner et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

(2011) B. D. Muegge et al.   SCIENCE

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Livestock grazing, plateau pikas and the conservation of avian biodiversity on the Tibetan plateau

(2008) Anthony D. Arthur et al.   BIOLOGICAL CONSERVATION