The Koala (Phascolarctos cinereus) faecal microbiome differs with diet in a wild population

Effects of 1,8-cineole on Carbohydrate Metabolism Related Cell Structure Changes of Salmonella

(2018) Yangying Sun et al.   Frontiers in Microbiology

Links between Natural Variation in the Microbiome and Host Fitness in Wild Mammals

(2017) Taichi A. Suzuki   INTEGRATIVE AND COMPARATIVE BIOLOGY

Genus-wide variation in foliar polyphenolics in eucalypts

(2017) Karen J. Marsh et al.   PHYTOCHEMISTRY

Specific microbiome-dependent mechanisms underlie the energy harvest efficiency of ruminants

(2016) Sheerli Kruger Ben Shabat et al.   ISME Journal

Antimicrobial activity of Eucalyptus camaldulensis essential oils and their interactions with conventional antimicrobial agents against multi-drug resistant Acinetobacter baumannii

(2016) Petar Knezevic et al.   JOURNAL OF ETHNOPHARMACOLOGY

Failure to Respond to Food Resource Decline Has Catastrophic Consequences for Koalas in a High-Density Population in Southern Australia

(2016) Desley A. Whisson et al.   PLoS One

Genomic characterization of the uncultured Bacteroidales family S24-7 inhabiting the guts of homeothermic animals

(2016) Kate L. Ormerod et al.   Microbiome

Deciphering Primordial Cyanobacterial Genome Functions from Protein Network Analysis

(2015) Arye Harel et al.   CURRENT BIOLOGY

Diet specialization selects for an unusual and simplified gut microbiota in two- and three-toed sloths

(2015) Kimberly A. Dill-McFarland et al.   ENVIRONMENTAL MICROBIOLOGY

Inoculation of tannin-degrading bacteria into novel hosts increases performance on tannin-rich diets

(2015) Kevin D. Kohl et al.   ENVIRONMENTAL MICROBIOLOGY

Ruminococcal cellulosome systems from rumen to human

(2015) Yonit Ben David et al.   ENVIRONMENTAL MICROBIOLOGY

Monitoring host responses to the gut microbiota

(2015) Joshua S Lichtman et al.   ISME Journal

From Leaf Metabolome to In Vivo Testing: Identifying Antifeedant Compounds for Ecological Studies of Marsupial Diets

(2015) Karen J. Marsh et al.   JOURNAL OF CHEMICAL ECOLOGY

The bacterial communities associated with fecal types and body weight of rex rabbits

(2015) Bo Zeng et al.   Scientific Reports

Variation in koala microbiomes within and between individuals: effect of body region and captivity status

(2015) Niccoló Alfano et al.   Scientific Reports

Habitat fragmentation is associated to gut microbiota diversity of an endangered primate: implications for conservation

(2015) Claudia Barelli et al.   Scientific Reports

Genomic Potential for Polysaccharide Deconstruction in Bacteria

(2014) Renaud Berlemont et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Gut microbes of mammalian herbivores facilitate intake of plant toxins

(2014) Kevin D. Kohl et al.   ECOLOGY LETTERS

An Expanded Genomic Representation of the Phylum Cyanobacteria

(2014) Rochelle M. Soo et al.   Genome Biology and Evolution

The Gastrointestinal Tract of the White-Throated Woodrat (Neotoma albigula) Harbors Distinct Consortia of Oxalate-Degrading Bacteria

(2013) Aaron W. Miller et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Habitat degradation impacts black howler monkey (Alouatta pigra) gastrointestinal microbiomes

(2013) Katherine R Amato et al.   ISME Journal

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Feeding rates of a mammalian browser confirm the predictions of a ‘foodscape’ model of its habitat

(2013) Karen J. Marsh et al.   OECOLOGIA

The Gut Bacterial Community of Mammals from Marine and Terrestrial Habitats

(2013) Tiffanie M. Nelson et al.   PLoS One

Investigation of the koala (Phascolarctos cinereus) hindgut microbiome via 16S pyrosequencing

(2013) Christopher J. Barker et al.   VETERINARY MICROBIOLOGY

The human gut and groundwater harbor non-photosynthetic bacteria belonging to a new candidate phylum sibling to Cyanobacteria

(2013) Sara C Di Rienzi et al.   eLife

Seasonal restructuring of the ground squirrel gut microbiota over the annual hibernation cycle

(2012) Hannah V. Carey et al.   AMERICAN JOURNAL OF PHYSIOLOGY-REGULATORY INTEGRATIVE AND COMPARATIVE PHYSIOLOGY

Experience matters: prior exposure to plant toxins enhances diversity of gut microbes in herbivores

(2012) Kevin D. Kohl et al.   ECOLOGY LETTERS

Isolation and survey of novel fluoroacetate-degrading bacteria belonging to the phylum Synergistetes

(2012) Carl K. Davis et al.   FEMS MICROBIOLOGY ECOLOGY

Characterization of the Fecal Microbiota Using High-Throughput Sequencing Reveals a Stable Microbial Community during Storage

(2012) Ian M. Carroll et al.   PLoS One

Advancing Eucalyptus genomics: identification and sequencing of lignin biosynthesis genes from deep-coverage BAC libraries

(2011) Jorge AP Paiva et al.   BMC GENOMICS

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans

(2011) B. D. Muegge et al.   SCIENCE

Bacterial biogeography of the human digestive tract

(2011) Jennifer C. Stearns et al.   Scientific Reports

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Effect of storage conditions on the assessment of bacterial community structure in soil and human-associated samples

(2010) Christian L. Lauber et al.   FEMS MICROBIOLOGY LETTERS

Available and not total nitrogen in leaves explains key chemical differences between the eucalypt subgenera

(2010) Ian R. Wallis et al.   FOREST ECOLOGY AND MANAGEMENT

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

A Metabolomic Approach to Identifying Chemical Mediators of Mammal–Plant Interactions

(2010) David J. Tucker et al.   JOURNAL OF CHEMICAL ECOLOGY

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Response of Gut Microbiota to Fasting and Hibernation in Syrian Hamsters

(2009) K. Sonoyama et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

The effects of plant defensive chemistry on nutrient availability predict reproductive success in a mammal

(2009) Jane L. DeGabriel et al.   ECOLOGY

Revisiting the dietary niche: When is a mammalian herbivore a specialist?

(2009) L. A. Shipley et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Inter-population differences in the tolerance of a marsupial folivore to plant secondary metabolites

(2009) Jane L. DeGabriel et al.   OECOLOGIA

Plant Cell Wall Breakdown by Anaerobic Microorganisms from the Mammalian Digestive Tract

(2008) Harry J. Flint et al.   Annals of the New York Academy of Sciences

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

Worlds within worlds: evolution of the vertebrate gut microbiota

(2008) Ruth E. Ley et al.   NATURE REVIEWS MICROBIOLOGY

The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics

(2008) B. L. Cantarel et al.   NUCLEIC ACIDS RESEARCH

A simple, integrative assay to quantify nutritional quality of browses for herbivores

(2008) Jane L. DeGabriel et al.   OECOLOGIA

Evolution of Mammals and Their Gut Microbes

(2008) R. E. Ley et al.   SCIENCE