Coordinated repression of pro-differentiation genes via P-bodies and transcription maintains Drosophila intestinal stem cell identity

Cohesin controls intestinal stem cell identity by maintaining association of Escargot with target promoters

(2020) Aliaksandr Khaminets et al.   eLife

Canonical nucleators are dispensable for stress granule assembly in Drosophila intestinal progenitors

(2020) Kasun Buddika et al.   JOURNAL OF CELL SCIENCE

Identification and Characterization of Breakpoints and Mutations on Drosophila melanogaster Balancer Chromosomes

(2020) Danny E. Miller et al.   G3-Genes Genomes Genetics

Pat1 promotes processing body assembly by enhancing the phase separation of the DEAD-box ATPase Dhh1 and RNA

(2019) Ruchika Sachdev et al.   eLife

The R package Rsubread is easier, faster, cheaper and better for alignment and quantification of RNA sequencing reads

(2019) Yang Liao et al.   NUCLEIC ACIDS RESEARCH

The RNA Helicase DDX6 Controls Cellular Plasticity by Modulating P-Body Homeostasis

(2019) Bruno Di Stefano et al.   Cell Stem Cell

Properties of Stress Granule and P-Body Proteomes

(2019) Ji-Young Youn et al.   MOLECULAR CELL

zfh2 controls progenitor cell activation and differentiation in the adult Drosophila intestinal absorptive lineage

(2019) Sebastian E. Rojas Villa et al.   PLoS Genetics

GC content shapes mRNA storage and decay in human cells

(2019) Maïté Courel et al.   eLife

P-Bodies: Composition, Properties, and Functions

(2018) Yang Luo et al.   BIOCHEMISTRY

Single-molecule imaging reveals dynamic biphasic partition of RNA-binding proteins in stress granules

(2018) Benedikt Niewidok et al.   JOURNAL OF CELL BIOLOGY

P-Bodies: Cytosolic Droplets for Coordinated mRNA Storage

(2018) Nancy Standart et al.   TRENDS IN GENETICS

Non-invasive measurement of mRNA decay reveals translation initiation as the major determinant of mRNA stability

(2018) Leon Y Chan et al.   eLife

P-Body Purification Reveals the Condensation of Repressed mRNA Regulons

(2017) Arnaud Hubstenberger et al.   MOLECULAR CELL

Injury-stimulated and self-restrained BMP signaling dynamically regulates stem cell pool size duringDrosophilamidgut regeneration

(2017) Aiguo Tian et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcription Factor Antagonism Controls Enteroendocrine Cell Specification from Intestinal Stem Cells

(2017) Yumei Li et al.   Scientific Reports

Opposing Post-transcriptional Control of InR by FMRP and LIN-28 Adjusts Stem Cell-Based Tissue Growth

(2017) Arthur Luhur et al.   Cell Reports

ATPase-Modulated Stress Granules Contain a Diverse Proteome and Substructure

(2016) Saumya Jain et al.   CELL

Mechanistic insights into mammalian stress granule dynamics

(2016) Marc D. Panas et al.   JOURNAL OF CELL BIOLOGY

deepTools2: a next generation web server for deep-sequencing data analysis

(2016) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

Principles and Properties of Stress Granules

(2016) David S.W. Protter et al.   TRENDS IN CELL BIOLOGY

ATPase activity of the DEAD-box protein Dhh1 controls processing body formation

(2016) Christopher Frederick Mugler et al.   eLife

Distinct stages in stress granule assembly and disassembly

(2016) Joshua R Wheeler et al.   eLife

TagDust2: a generic method to extract reads from sequencing data

(2015) Timo Lassmann   BMC BIOINFORMATICS

Lin-28 promotes symmetric stem cell division and drives adaptive growth in the adultDrosophilaintestine

(2015) Ching-Huan Chen et al.   DEVELOPMENT

Robust intestinal homeostasis relies on cellular plasticity in enteroblasts mediated by miR-8-Escargot switch

(2015) Z. A. Antonello et al.   EMBO JOURNAL

P-body assembly requires DDX6 repression complexes rather than decay or Ataxin2/2L complexes

(2015) Jessica Ayache et al.   MOLECULAR BIOLOGY OF THE CELL

DDX6 Orchestrates Mammalian Progenitor Function through the mRNA Degradation and Translation Pathways

(2015) Ying Wang et al.   MOLECULAR CELL

Regulation ofDrosophilaintestinal stem cell maintenance and differentiation by the transcription factor Escargot

(2014) Mariano A Loza‐Coll et al.   EMBO JOURNAL

Escargotmaintains stemness and suppresses differentiation inDrosophilaintestinal stem cells

(2014) Jerome Korzelius et al.   EMBO JOURNAL

Screening of small molecules affecting mammalian P-body assembly uncovers links with diverse intracellular processes and organelle physiology

(2013) Javier P Martínez et al.   RNA Biology

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

The conserved P body component HPat/Pat1 negatively regulates synaptic terminal growth at the larval Drosophila neuromuscular junction

(2012) S. J. Pradhan et al.   JOURNAL OF CELL SCIENCE

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

P-Bodies and Stress Granules: Possible Roles in the Control of Translation and mRNA Degradation

(2012) C. J. Decker et al.   Cold Spring Harbor Perspectives in Biology

Altered Modes of Stem Cell Division Drive Adaptive Intestinal Growth

(2011) Lucy Erin O'Brien et al.   CELL

The cAMP-Dependent Protein Kinase Signaling Pathway Is a Key Regulator of P Body Foci Formation

(2011) Vidhya Ramachandran et al.   MOLECULAR CELL

Drosophila Ge-1 Promotes P Body Formation and oskar mRNA Localization

(2011) Shih-Jung Fan et al.   PLoS One

Characterization of midgut stem cell- and enteroblast-specific Gal4 lines in drosophila

(2010) Xiankun Zeng et al.   GENESIS

Decapping Activators in Saccharomyces cerevisiae Act by Multiple Mechanisms

(2010) Tracy Nissan et al.   MOLECULAR CELL

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Tissue Damage-Induced Intestinal Stem Cell Division in Drosophila

(2009) Alla Amcheslavsky et al.   Cell Stem Cell

Stress granules

(2009) Paul Anderson et al.   CURRENT BIOLOGY

Eukaryotic Stress Granules: The Ins and Outs of Translation

(2009) J. Ross Buchan et al.   MOLECULAR CELL

The Control of mRNA Decapping and P-Body Formation

(2008) Tobias M. Franks et al.   MOLECULAR CELL