Enhanced Optical Spectroscopy for Multiplexed DNA and Protein-Sequencing with Plasmonic Nanopores: Challenges and Prospects

Palladium zero-mode waveguides for optical single molecule detection with nanopores

(2021) Nils Klughammer et al.   NANOTECHNOLOGY

Biological Nanopores: Engineering on Demand

(2021) Ana Crnković et al.   Life-Basel

Magnetic control of particle trapping in a hybrid plasmonic nanopore

(2021) Nicolò Maccaferri et al.   APPLIED PHYSICS LETTERS

Nano‐Optical Tweezers: Methods and Applications for Trapping Single Molecules and Nanoparticles

(2021) Joshua D Kolbow et al.   CHEMPHYSCHEM

Mass Transport through a Sub-10 nm Single Gold Nanopore: SERS and Ionic Current Measurement

(2021) Qi Shen et al.   JOURNAL OF ELECTROANALYTICAL CHEMISTRY

An alternative approach to nucleic acid memory

(2021) George D. Dickinson et al.   Nature Communications

Simultaneous readout of multiple FRET pairs using photochromism

(2021) Thijs Roebroek et al.   Nature Communications

Plasmonic Biosensors for Single-Molecule Biomedical Analysis

(2021) Elba Mauriz et al.   Biosensors-Basel

Probing Multidimensional Structural Information of Single Molecules Transporting through a Sub-10 nm Conical Plasmonic Nanopore by SERS

(2021) Juan Zhou et al.   ANALYTICAL CHEMISTRY

The emerging landscape of single-molecule protein sequencing technologies

(2021) Javier Antonio Alfaro et al.   NATURE METHODS

Nanopore electro-osmotic trap for the label-free study of single proteins and their conformations

(2021) Sonja Schmid et al.   Nature Nanotechnology

Bottom-up fabrication of a proteasome–nanopore that unravels and processes single proteins

(2021) Shengli Zhang et al.   Nature Chemistry

Multiple rereads of single proteins at single–amino acid resolution using nanopores

(2021) Henry Brinkerhoff et al.   SCIENCE

Thermoplasmonics of metal layers and nanoholes

(2021) Benoit Rogez et al.   APL Photonics

FIB-milled plasmonic nanoapertures allow for long trapping times of individual proteins

(2021) Wayne Yang et al.   iScience

DNA storage: research landscape and future prospects

(2020) Yiming Dong et al.   National Science Review

Multiplexed Discrimination of Single Amino Acid Residues in Polypeptides in a Single SERS Hot Spot

(2020) Jian‐An Huang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Finite-difference time-domain simulations of inverted cone-shaped plasmonic nanopore structures

(2020) Rintaro Matsuda et al.   JOURNAL OF APPLIED PHYSICS

Information stored in nanoscale: Encoding data in a single DNA strand with Base64

(2020) Yi Zhang et al.   Nano Today

SERS Detection of Nucleobases in Single Silver Plasmonic Nanopores

(2020) Jiao Cao et al.   ACS Sensors

λ-DNA through Porous Materials—Surface-Enhanced Raman Scattering in a Simple Plasmonic Nanopore

(2020) Aliaksandr Hubarevich et al.   Journal of Physical Chemistry C

Adaptive nanopores: A bioinspired label-free approach for protein sequencing and identification

(2020) Andrea Spitaleri et al.   Nano Research

Biological Nanopore Approach for Single‐Molecule Protein Sequencing

(2020) Zheng-Li Hu et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Plasmonic Assemblies for Real‐Time Single‐Molecule Biosensing

(2020) Rachel E. Armstrong et al.   Small

Förster-Resonance Energy Transfer between Diffusing Molecules and a Functionalized Plasmonic Nanopore

(2020) Xavier Zambrana-Puyalto et al.   Physical Review Applied

Surface-Enhanced Raman Scattering Probing the Translocation of DNA and Amino Acid through Plasmonic Nanopores

(2019) Jin-Mei Yang et al.   ANALYTICAL CHEMISTRY

Nanopore blockade sensors for ultrasensitive detection of proteins in complex biological samples

(2019) Kyloon Chuah et al.   Nature Communications

A Plasmonic Gold Nanohole Array for Surface-Enhanced Raman Scattering Detection of DNA Methylation

(2019) Xiaojun Luo et al.   ACS Sensors

Plasmon-enhanced light–matter interactions and applications

(2019) Huakang Yu et al.   npj Computational Materials

Small molecule electro-optical binding assay using nanopores

(2019) Shenglin Cai et al.   Nature Communications

Site-Selective Integration of MoS2 Flakes on Nanopores by Means of Electrophoretic Deposition

(2019) Dario Mosconi et al.   ACS Omega

FÖrster resonance energy transfer (FRET)-based biosensors for biological applications

(2019) Xiaojing Zhang et al.   BIOSENSORS & BIOELECTRONICS

On-Chip Stretching, Sorting, and Electro-Optical Nanopore Sensing of Ultralong Human Genomic DNA

(2019) Adam Zrehen et al.   ACS Nano

Plasmonic Nanopores for Single-Molecule Detection and Manipulation: Toward Sequencing Applications

(2019) Denis Garoli et al.   NANO LETTERS

SERS discrimination of single DNA bases in single oligonucleotides by electro-plasmonic trapping

(2019) Jian-An Huang et al.   Nature Communications

Electrophoretic Deposition of WS2 Flakes on Nanoholes Arrays—Role of Used Suspension Medium

(2019) Dario Mosconi et al.   Materials

Recent applications of FRET-based multiplexed techniques

(2019) Anisa Kaur et al.   TRAC-TRENDS IN ANALYTICAL CHEMISTRY

Bio‐Assisted Tailored Synthesis of Plasmonic Silver Nanorings and Site‐Selective Deposition on Graphene Arrays

(2019) Giorgia Giovannini et al.   Advanced Optical Materials

Shell-Isolated Tip-Enhanced Raman and Fluorescence Spectroscopy

(2018) Ya-Ping Huang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Single molecule real-time (SMRT) sequencing comes of age: applications and utilities for medical diagnostics

(2018) Simon Ardui et al.   NUCLEIC ACIDS RESEARCH

Single-molecule peptide fingerprinting

(2018) Jetty van Ginkel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hydrodynamic interactions in DNA thermophoresis

(2018) Aboubakry Ly et al.   Soft Matter

High spatial resolution nanoslit SERS for single-molecule nucleobase sensing

(2018) Chang Chen et al.   Nature Communications

Hybrid plasmonic nanostructures based on controlled integration of MoS2 flakes on metallic nanoholes

(2018) Denis Garoli et al.   Nanoscale

Plasmonic zero mode waveguide for highly confined and enhanced fluorescence emission

(2018) Paolo Ponzellini et al.   Nanoscale

Paving the way to single-molecule protein sequencing

(2018) Laura Restrepo-Pérez et al.   Nature Nanotechnology

Single-Molecule Sequencing: Towards Clinical Applications

(2018) Adam Ameur et al.   TRENDS IN BIOTECHNOLOGY

Label-Free Optical Detection of DNA Translocations through Plasmonic Nanopores

(2018) Daniel V. Verschueren et al.   ACS Nano

Active Delivery of Single DNA Molecules into a Plasmonic Nanopore for Label-Free Optical Sensing

(2018) Xin Shi et al.   NANO LETTERS

Temperature dependence of the translocation time of polymer through repulsive nanopores

(2017) Meng-Bo Luo et al.   JOURNAL OF CHEMICAL PHYSICS

Length-independent DNA packing into nanopore zero-mode waveguides for low-input DNA sequencing

(2017) Joseph Larkin et al.   Nature Nanotechnology

Integrating Sub-3 nm Plasmonic Gaps into Solid-State Nanopores

(2017) Xin Shi et al.   Small

Drop coating deposition Raman spectroscopy of proteinogenic amino acids compared with their solution and crystalline state

(2017) Tomáš Pazderka et al.   SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY

Improvement of Sensing and Trapping Efficiency of Double Nanohole Apertures via Enhancing the Wedge Plasmon Polariton Modes with Tapered Cusps

(2017) Mostafa Ghorbanzadeh et al.   ACS Photonics

Low-Noise Plasmonic Nanopore Biosensors for Single Molecule Detection at Elevated Temperatures

(2017) Colin R. Crick et al.   ACS Photonics

Single-Molecule Plasmon Sensing: Current Status and Future Prospects

(2017) Adam B. Taylor et al.   ACS Sensors

Single-Molecule DNA Methylation Quantification Using Electro-optical Sensing in Solid-State Nanopores

(2016) Tal Gilboa et al.   ACS Nano

Light-Enhancing Plasmonic-Nanopore Biosensor for Superior Single-Molecule Detection

(2016) Ossama N. Assad et al.   ADVANCED MATERIALS

Nanopore Sensing

(2016) Wenqing Shi et al.   ANALYTICAL CHEMISTRY

Kinase phosphorylation monitoring with i-motif DNA cross-linked SERS probes

(2016) Wen Ren et al.   CHEMICAL COMMUNICATIONS

Single molecule detection with graphene and other two-dimensional materials: nanopores and beyond

(2016) Hadi Arjmandi-Tash et al.   CHEMICAL SOCIETY REVIEWS

Quantitative FRET studies and integrative modeling unravel the structure and dynamics of biomolecular systems

(2016) Mykola Dimura et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Solid-State Nanopore-Based DNA Sequencing Technology

(2016) Zewen Liu et al.   Journal of Nanomaterials

MspA nanopore as a single-molecule tool: From sequencing to SPRNT

(2016) Andrew H. Laszlo et al.   METHODS

Optofluidic devices with integrated solid-state nanopores

(2016) Shuo Liu et al.   MICROCHIMICA ACTA

Measurement of DNA Translocation Dynamics in a Solid-State Nanopore at 100 ns Temporal Resolution

(2016) Siddharth Shekar et al.   NANO LETTERS

Real-time shape approximation and fingerprinting of single proteins using a nanopore

(2016) Erik C. Yusko et al.   Nature Nanotechnology

On-Demand Surface- and Tip-Enhanced Raman Spectroscopy Using Dielectrophoretic Trapping and Nanopore Sensing

(2016) Kevin J. Freedman et al.   ACS Photonics

Integrated solid-state nanopore platform for nanopore fabrication via dielectric breakdown, DNA-speed deceleration and noise reduction

(2016) Yusuke Goto et al.   Scientific Reports

Plasmonic Nanopores for Trapping, Controlling Displacement, and Sequencing of DNA

(2015) Maxim Belkin et al.   ACS Nano

Sensing applications based on plasmonic nanopores: The hole story

(2015) Andreas B. Dahlin   ANALYST

Interfacing solid-state nanopores with gel media to slow DNA translocations

(2015) Matthew Waugh et al.   ELECTROPHORESIS

How Far Can We Probe by SERS?

(2015) Gayatri Kumari et al.   Journal of Physical Chemistry C

Label-Free Surface-Enhanced Raman Spectroscopy Detection of DNA with Single-Base Sensitivity

(2015) Li-Jia Xu et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Solid-state nanopore-based DNA single molecule detection and sequencing

(2015) Ji Li et al.   MICROCHIMICA ACTA

Interaction prolonged DNA translocation through solid-state nanopores

(2015) Zexi Liang et al.   Nanoscale

Raman fingerprinting of single dielectric nanoparticles in plasmonic nanopores

(2015) Sarp Kerman et al.   Nanoscale

Temperature dependence of DNA translocations through solid-state nanopores

(2015) Daniel V Verschueren et al.   NANOTECHNOLOGY

Subangstrom single-molecule measurements of motor proteins using a nanopore

(2015) Ian M Derrington et al.   NATURE BIOTECHNOLOGY

Single-molecule sensing with nanopores

(2015) Murugappan Muthukumar et al.   PHYSICS TODAY

Nanopore sensing of individual transcription factors bound to DNA

(2015) Allison Squires et al.   Scientific Reports

Probing Solid-State Nanopores with Light for the Detection of Unlabeled Analytes

(2014) Brett N. Anderson et al.   ACS Nano

DNA Base Detection Using a Single-Layer MoS2

(2014) Amir Barati Farimani et al.   ACS Nano

Label-Free Detection of Native Proteins by Surface-Enhanced Raman Spectroscopy Using Iodide-Modified Nanoparticles

(2014) Li-Jia Xu et al.   ANALYTICAL CHEMISTRY

High-Bandwidth Protein Analysis Using Solid-State Nanopores

(2014) Joseph Larkin et al.   BIOPHYSICAL JOURNAL

Reversible Positioning of Single Molecules inside Zero-Mode Waveguides

(2014) Joseph Larkin et al.   NANO LETTERS

Two Color DNA Barcode Detection in Photoluminescence Suppressed Silicon Nitride Nanopores

(2014) Ossama N. Assad et al.   NANO LETTERS

DNA Translocations through Solid-State Plasmonic Nanopores

(2014) Francesca Nicoli et al.   NANO LETTERS

Nanopore Fabrication by Controlled Dielectric Breakdown

(2014) Harold Kwok et al.   PLoS One

Detecting DNA Depurination with Solid-State Nanopores

(2014) Michael M. Marshall et al.   PLoS One

Plasmonic antennas and zero-mode waveguides to enhance single molecule fluorescence detection and fluorescence correlation spectroscopy toward physiological concentrations

(2014) Deep Punj et al.   Wiley Interdisciplinary Reviews-Nanomedicine and Nanobiotechnology

Modeling thermophoretic effects in solid-state nanopores

(2014) Maxim Belkin et al.   Journal of Computational Electronics

Surface-Enhanced Hyper-Raman Scattering from Single Molecules

(2013) Chris B. Milojevich et al.   Journal of Physical Chemistry Letters

Plasmonic Nanopore for Electrical Profiling of Optical Intensity Landscapes

(2013) Magnus P. Jonsson et al.   NANO LETTERS

Rapid Ultrasensitive Single Particle Surface-Enhanced Raman Spectroscopy Using Metallic Nanopores

(2013) Michael P. Cecchini et al.   NANO LETTERS

A plasmonic ‘antenna-in-box’ platform for enhanced single-molecule analysis at micromolar concentrations

(2013) Deep Punj et al.   Nature Nanotechnology

Optoelectronic control of surface charge and translocation dynamics in solid-state nanopores

(2013) Nicolas Di Fiori et al.   Nature Nanotechnology

Single molecule sensing with solid-state nanopores: novel materials, methods, and applications

(2012) Benjamin N. Miles et al.   CHEMICAL SOCIETY REVIEWS

Stochastic sensing of proteins with receptor-modified solid-state nanopores

(2012) Ruoshan Wei et al.   Nature Nanotechnology

Cross-section and selection rules in surface-enhanced hyper Raman scattering

(2011) A. M. Polubotko et al.   JOURNAL OF RAMAN SPECTROSCOPY

Plasmonic Antennas for Directional Sorting of Fluorescence Emission

(2011) Heykel Aouani et al.   NANO LETTERS

Optical Trapping of a Single Protein

(2011) Yuanjie Pang et al.   NANO LETTERS

Controlling protein translocation through nanopores with bio-inspired fluid walls

(2011) Erik C. Yusko et al.   Nature Nanotechnology

The Passage of Homopolymeric RNA through Small Solid-State Nanopores

(2011) Michiel van den Hout et al.   Small

Trapping and rotating nanoparticles using a plasmonic nano-tweezer with an integrated heat sink

(2011) Kai Wang et al.   Nature Communications

Recent advances in single-molecule sequencing

(2010) Regina Treffer et al.   CURRENT OPINION IN BIOTECHNOLOGY

Polymer translocation through α-hemolysin pore with tunable polymer-pore electrostatic interaction

(2010) Chiu Tai Andrew Wong et al.   JOURNAL OF CHEMICAL PHYSICS

Optical Trapping of Quantum Dots Based on Gap-Mode-Excitation of Localized Surface Plasmon

(2010) Yasuyuki Tsuboi et al.   Journal of Physical Chemistry Letters

Hybrid pore formation by directed insertion of α-haemolysin into solid-state nanopores

(2010) Adam R. Hall et al.   Nature Nanotechnology

Synchronous optical and electrical detection of biomolecules traversing through solid-state nanopores

(2010) Gautam V. Soni et al.   REVIEW OF SCIENTIFIC INSTRUMENTS

Direct Evidence of High Spatial Localization of Hot Spots in Surface-Enhanced Raman Scattering

(2009) Chang Chen et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Focusing Plasmons in Nanoslits for Surface-Enhanced Raman Scattering

(2009) Chang Chen et al.   Small

An ON/OFF biosensor based on blockade of ionic current passing through a solid-state nanopore

(2008) Manola Moretti et al.   BIOSENSORS & BIOELECTRONICS

A practical guide to single-molecule FRET

(2008) Rahul Roy et al.   NATURE METHODS

Measurement of the Distribution of Site Enhancements in Surface-Enhanced Raman Scattering

(2008) Y. Fang et al.   SCIENCE

Real-Time DNA Sequencing from Single Polymerase Molecules

(2008) J. Eid et al.   SCIENCE