Statistical Integration of ‘Omics Data Increases Biological Knowledge Extracted from Metabolomics Data: Application to Intestinal Exposure to the Mycotoxin Deoxynivalenol

1H-NMR metabolomics response to a realistic diet contamination with the mycotoxin deoxynivalenol: Effect of probiotics supplementation

(2020) Imourana Alassane-Kpembi et al.   FOOD AND CHEMICAL TOXICOLOGY

Transgenerational metabolic disorders and reproduction defects induced by benzo[a]pyrene in Xenopus tropicalis

(2020) Marie Usal et al.   ENVIRONMENTAL POLLUTION

Global Mycotoxin Occurrence in Feed: A Ten-Year Survey

(2019) Christiane Gruber-Dorninger et al.   Toxins

An Integrative Multi-Omics Workflow to Address Multifactorial Toxicology Experiments

(2019) Víctor González-Ruiz et al.   Metabolites

Multi-block PLS discriminant analysis for the joint analysis of metabolomic and epidemiological data

(2019) Marion Brandolini-Bunlon et al.   Metabolomics

Enhanced phosphocholine metabolism is essential for terminal erythropoiesis

(2018) Nai-Jia Huang et al.   BLOOD

MetExplore: collaborative edition and exploration of metabolic networks

(2018) Ludovic Cottret et al.   NUCLEIC ACIDS RESEARCH

Saccharomyces cerevisiae Boulardii Reduces the Deoxynivalenol-Induced Alteration of the Intestinal Transcriptome

(2018) Imourana Alassane-Kpembi et al.   Toxins

Functions and Signaling Pathways of Amino Acids in Intestinal Inflammation

(2018) Fang He et al.   Biomed Research International

An Untargeted Metabolomics Approach to Investigate the Metabolic Modulations of HepG2 Cells Exposed to Low Doses of Bisphenol A and 17β-Estradiol

(2018) Nicolas J. Cabaton et al.   Frontiers in Endocrinology

Integrating omics datasets with the OmicsPLS package

(2018) Said el Bouhaddani et al.   BMC BIOINFORMATICS

The role of metabolomics in determination of new dietary biomarkers

(2017) A. O'Gorman et al.   PROCEEDINGS OF THE NUTRITION SOCIETY

The Food Contaminants Nivalenol and Deoxynivalenol Induce Inflammation in Intestinal Epithelial Cells by Regulating Reactive Oxygen Species Release

(2017) Simona Adesso et al.   Nutrients

Forthcoming Challenges in Mycotoxins Toxicology Research for Safer Food—A Need for Multi-Omics Approach

(2017) Luca Dellafiora et al.   Toxins

Intestinal toxicity of the type B trichothecene mycotoxin fusarenon-X: whole transcriptome profiling reveals new signaling pathways

(2017) Imourana Alassane-Kpembi et al.   Scientific Reports

Exploring Omics data from designed experiments using analysis of variance multiblock Orthogonal Partial Least Squares

(2016) Julien Boccard et al.   ANALYTICA CHIMICA ACTA

Toxicology of deoxynivalenol and its acetylated and modified forms

(2016) Delphine Payros et al.   ARCHIVES OF TOXICOLOGY

Evaluation of O2PLS in Omics data integration

(2016) Said el Bouhaddani et al.   BMC BIOINFORMATICS

Robust sparse canonical correlation analysis

(2016) Ines Wilms et al.   BMC Systems Biology

The amino acid sensor GCN2 controls gut inflammation by inhibiting inflammasome activation

(2016) Rajesh Ravindran et al.   NATURE

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Microbial biotransformation of DON: molecular basis for reduced toxicity

(2016) Alix Pierron et al.   Scientific Reports

Intestinal toxicity of the masked mycotoxin deoxynivalenol-3-β-d-glucoside

(2015) Alix Pierron et al.   ARCHIVES OF TOXICOLOGY

Analysis of the Human Adult Urinary Metabolome Variations with Age, Body Mass Index, and Gender by Implementing a Comprehensive Workflow for Univariate and OPLS Statistical Analyses

(2015) Etienne A. Thévenot et al.   JOURNAL OF PROTEOME RESEARCH

Methods of integrating data to uncover genotype–phenotype interactions

(2015) Marylyn D. Ritchie et al.   NATURE REVIEWS GENETICS

Integrating metabolomic data from multiple analytical platforms for a comprehensive characterisation of lemon essential oils

(2014) Florence Mehl et al.   FLAVOUR AND FRAGRANCE JOURNAL

Pathway and Time-Resolved Benzo[a]pyrene Toxicity on Hepa1c1c7 Cells at Toxic and Subtoxic Exposure

(2014) Stefan Kalkhof et al.   JOURNAL OF PROTEOME RESEARCH

Comprehensive review on lactate metabolism in human health

(2014) M. Adeva-Andany et al.   MITOCHONDRION

An NMR-Based Metabolomic Approach to Investigate the Effects of Supplementation with Glutamic Acid in Piglets Challenged with Deoxynivalenol

(2014) Miaomiao Wu et al.   PLoS One

Effect of Deoxynivalenol and Other Type B Trichothecenes on the Intestine: A Review

(2014) Philippe Pinton et al.   Toxins

A consensus orthogonal partial least squares discriminant analysis (OPLS-DA) strategy for multiblock Omics data fusion

(2013) Julien Boccard et al.   ANALYTICA CHIMICA ACTA

Deoxynivalenol as a New Factor in the Persistence of Intestinal Inflammatory Diseases: An Emerging Hypothesis through Possible Modulation of Th17-Mediated Response

(2013) Patricia M. Cano et al.   PLoS One

Statistical strategies for relating metabolomics and proteomics data: a real case study in nutrition research area

(2012) Thomas Moyon et al.   Metabolomics

Model validation and error estimation in multi-block partial least squares regression

(2011) Sahar Hassani et al.   CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS

Sparse canonical methods for biological data integration: application to a cross-platform study

(2009) Kim-Anh Lê Cao et al.   BMC BIOINFORMATICS

Thioredoxin-interacting protein links oxidative stress to inflammasome activation

(2009) Rongbin Zhou et al.   NATURE IMMUNOLOGY

Impact of Deoxynivalenol on the Intestinal Microflora of Pigs

(2008) Yann Waché et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Integrated Analysis of Transcript, Protein and Metabolite Data To Study Lignin Biosynthesis in Hybrid Aspen

(2008) Max Bylesjö et al.   JOURNAL OF PROTEOME RESEARCH