Coral microbiome manipulation elicits metabolic and genetic restructuring to mitigate heat stress and evade mortality

Heat stress destabilizes symbiotic nutrient cycling in corals

(2021) Nils Rädecker et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Designing a blueprint for coral reef survival

(2021) Joan Kleypas et al.   BIOLOGICAL CONSERVATION

Shifting the microbiome of a coral holobiont and improving host physiology by inoculation with a potentially beneficial bacterial consortium

(2021) Ying Zhang et al.   BMC MICROBIOLOGY

Fast and pervasive transcriptomic resilience and acclimation of extremely heat-tolerant coral holobionts from the northern Red Sea

(2021) Romain Savary et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Multi-domain probiotic consortium as an alternative to chemical remediation of oil spills at coral reefs and adjacent sites

(2021) Denise P. Silva et al.   Microbiome

Dimethylsulfoniopropionate Sulfur and Methyl Carbon Assimilation in Ruegeria Species

(2020) Joseph S. Wirth et al.   mBio

Microbiome Flexibility Provides New Perspectives in Coral Research

(2020) Helena Villela   BIOESSAYS

Adapting with Microbial Help: Microbiome Flexibility Facilitates Rapid Responses to Environmental Change

(2020) Christian R. Voolstra et al.   BIOESSAYS

Standardized short‐term acute heat stress assays resolve historical differences in coral thermotolerance across microhabitat reef sites

(2020) Christian R. Voolstra et al.   GLOBAL CHANGE BIOLOGY

Meta‐analysis of the coral environmental stress response: Acropora corals show opposing responses depending on stress intensity

(2020) Groves Dixon et al.   MOLECULAR ECOLOGY

From Microbiome to Traits: Designing Synthetic Microbial Communities for Improved Crop Resiliency

(2020) Rafael Soares Correa de Souza et al.   Frontiers in Plant Science

Coral Probiotics: Premise, Promise, Prospects

(2020) Raquel S. Peixoto et al.   Annual Review of Animal Biosciences

Improved taxonomic assignment of rumen bacterial 16S rRNA sequences using a revised SILVA taxonomic framework

(2019) Gemma Henderson et al.   PeerJ

SMARCAD1 ATPase activity is required to silence endogenous retroviruses in embryonic stem cells

(2019) Parysatis Sachs et al.   Nature Communications

Adaptable mesocosm facility to study oil spill impacts on corals

(2019) Denise P. Silva et al.   Ecology and Evolution

Beneficial roles of probiotics on the modulation of gut microbiota and immune response in pigs

(2019) Donghyun Shin et al.   PLoS One

rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data

(2019) Elena Bushmanova et al.   GigaScience

A genomic view of the reef-building coral Porites lutea and its microbial symbionts

(2019) Steven J. Robbins et al.   Nature Microbiology

Symbiodiniaceae probiotics for use in bleaching recovery

(2019) Carys A. Morgans et al.   RESTORATION ECOLOGY

Compositional homogeneity in the pathobiome of a new, slow-spreading coral disease

(2019) Michael Sweet et al.   Microbiome

Spatial and temporal patterns of mass bleaching of corals in the Anthropocene

(2018) Terry P. Hughes et al.   SCIENCE

Specific plasmid patterns and high rates of bacterial co-occurrence within the coral holobiont

(2018) Deborah C. A. Leite et al.   Ecology and Evolution

Coral Bacterial-Core Abundance and Network Complexity as Proxies for Anthropogenic Pollution

(2018) Deborah C. A. Leite et al.   Frontiers in Microbiology

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

Systematic Revision of Symbiodiniaceae Highlights the Antiquity and Diversity of Coral Endosymbionts

(2018) Todd C. LaJeunesse et al.   CURRENT BIOLOGY

Ruegeria sp. Strains Isolated from the Reef-Building Coral Galaxea fascicularis Inhibit Growth of the Temperature-Dependent Pathogen Vibrio coralliilyticus

(2018) Natsuko Miura et al.   MARINE BIOTECHNOLOGY

Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation

(2018) Phillipe M. Rosado et al.   ISME Journal

Microbial contributions to the persistence of coral reefs

(2017) Nicole S Webster et al.   ISME Journal

The genomics of recovery from coral bleaching

(2017) Luke Thomas et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Bacterial community dynamics are linked to patterns of coral heat tolerance

(2017) Maren Ziegler et al.   Nature Communications

Subcellular tracking reveals the location of dimethylsulfoniopropionate in microalgae and visualises its uptake by marine bacteria

(2017) Jean-Baptiste Raina et al.   eLife

Broadcast Spawning Coral Mussismilia hispida Can Vertically Transfer its Associated Bacterial Core

(2017) Deborah C. A. Leite et al.   Frontiers in Microbiology

Beneficial Microorganisms for Corals (BMC): Proposed Mechanisms for Coral Health and Resilience

(2017) Raquel S. Peixoto et al.   Frontiers in Microbiology

Stress and stability: applying the Anna Karenina principle to animal microbiomes

(2017) Jesse R. Zaneveld et al.   Nature Microbiology

ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data

(2016) Jaime Huerta-Cepas et al.   MOLECULAR BIOLOGY AND EVOLUTION

Isolation of an antimicrobial compound produced by bacteria associated with reef-building corals

(2016) Jean-Baptiste Raina et al.   PeerJ

Relative Contributions of Various Cellular Mechanisms to Loss of Algae during Cnidarian Bleaching

(2016) Tamaki Bieri et al.   PLoS One

Structure of mycobacterial maltokinase, the missing link in the essential GlgE-pathway

(2015) Joana Fraga et al.   Scientific Reports

Post-traumatic stress disorder

(2015) Rachel Yehuda et al.   Nature Reviews Disease Primers

Age-Related Shifts in Bacterial Diversity in a Reef Coral

(2015) Alex D. Williams et al.   PLoS One

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

A bacterial pathogen uses dimethylsulfoniopropionate as a cue to target heat-stressed corals

(2013) Melissa Garren et al.   ISME Journal

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Thermal Stress Promotes Host Mitochondrial Degradation in Symbiotic Cnidarians: Are the Batteries of the Reef Going to Run Out?

(2012) Simon R. Dunn et al.   PLoS One

Innate Immune Responses of a Scleractinian Coral to Vibriosis

(2011) Jeremie Vidal-Dupiol et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Physiological responses of the scleractinian coral Pocillopora damicornis to bacterial stress from Vibrio coralliilyticus

(2011) J. Vidal-Dupiol et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Metagenomic analysis of the coral holobiont during a natural bleaching event on the Great Barrier Reef

(2011) Raechel Littman et al.   Environmental Microbiology Reports

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Caribbean Corals in Crisis: Record Thermal Stress, Bleaching, and Mortality in 2005

(2010) C. Mark Eakin et al.   PLoS One

Bioremediation of Mangroves Impacted by Petroleum

(2010) Henrique F. Santos et al.   WATER AIR AND SOIL POLLUTION

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Caspases and Kinases in a Death Grip

(2009) Manabu Kurokawa et al.   CELL

A Convergence of rRNA and mRNA Quality Control Pathways Revealed by Mechanistic Analysis of Nonfunctional rRNA Decay

(2009) Sarah E. Cole et al.   MOLECULAR CELL

Diversity and pathogenic potential of vibrios isolated from Abrolhos Bank corals

(2009) Nelson Alves Jr et al.   Environmental Microbiology Reports

Cellular mechanisms of Cnidarian bleaching: stress causes the collapse of symbiosis

(2008) V. M. Weis   JOURNAL OF EXPERIMENTAL BIOLOGY

Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing

(2008) Anders F. Andersson et al.   PLoS One