Structures of artificially designed discrete RNA nanoarchitectures at near-atomic resolution

Branched kissing loops for the construction of diverse RNA homooligomeric nanostructures

(2020) Di Liu et al.   Nature Chemistry

Ordered three-dimensional nanomaterials using DNA-prescribed and valence-controlled material voxels

(2020) Ye Tian et al.   NATURE MATERIALS

QRNAS: software tool for refinement of nucleic acid structures

(2019) Juliusz Stasiewicz et al.   BMC STRUCTURAL BIOLOGY

Structure and ligand binding of the glutamine-II riboswitch

(2019) Lin Huang et al.   NUCLEIC ACIDS RESEARCH

Crystal structure of an adenovirus virus-associated RNA

(2019) Iris V. Hood et al.   Nature Communications

Structural basis for tRNA decoding and aminoacylation sensing by T-box riboregulators

(2019) Robert A. Battaglia et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Structural basis of amino acid surveillance by higher-order tRNA-mRNA interactions

(2019) Shuang Li et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

3D DNA Origami Crystals

(2018) Tao Zhang et al.   ADVANCED MATERIALS

High-Throughput Investigation of Diverse Junction Elements in RNA Tertiary Folding

(2018) Sarah Knight Denny et al.   CELL

Paranemic Crossover DNA: There and Back Again

(2018) Xing Wang et al.   CHEMICAL REVIEWS

Principles for targeting RNA with drug-like small molecules

(2018) Katherine Deigan Warner et al.   NATURE REVIEWS DRUG DISCOVERY

In vivo production of RNA nanostructures via programmed folding of single-stranded RNAs

(2018) Mo Li et al.   Nature Communications

Self-Assembly of a 3D DNA Crystal Structure with Rationally Designed Six-Fold Symmetry

(2018) Fei Zhang et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1

(2018) Bertrand Beckert et al.   Nature Microbiology

Synthesizing topological structures containing RNA

(2017) Di Liu et al.   Nature Communications

DNA nanotechnology

(2017) Nadrian C. Seeman et al.   Nature Reviews Materials

Crystal-Structure-Guided Design of Self-Assembling RNA Nanotriangles

(2016) Mark A. Boerneke et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Construction and Structure Determination of a Three-Dimensional DNA Crystal

(2016) Chad R. Simmons et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

A quasi-cyclic RNA nano-scale molecular object constructed using kink turns

(2016) Lin Huang et al.   Nanoscale

Pistol ribozyme adopts a pseudoknot fold facilitating site-specific in-line cleavage

(2016) Aiming Ren et al.   Nature Chemical Biology

Revisiting the Anomalous Bending Elasticity of Sharply Bent DNA

(2015) Peiwen Cong et al.   BIOPHYSICAL JOURNAL

Metal Ion-Mediated Nucleobase Recognition by the ZTP Riboswitch

(2015) Jeremiah J. Trausch et al.   CHEMISTRY & BIOLOGY

Microsecond-Scale MD Simulations of HIV-1 DIS Kissing-Loop Complexes Predict Bulged-In Conformation of the Bulged Bases and Reveal Interesting Differences between Available Variants of the AMBER RNA Force Fields

(2015) Marek Havrila et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Crystal structure of the Varkud satellite ribozyme

(2015) Nikolai B Suslov et al.   Nature Chemical Biology

Recognition of the bacterial alarmone ZMP through long-distance association of two RNA subdomains

(2015) Christopher P Jones et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction

(2015) Michal J. Boniecki et al.   NUCLEIC ACIDS RESEARCH

Twenty years of RNA crystallography

(2015) Eric Westhof   RNA

De novo design of an RNA tile that self-assembles into a homo-octameric nanoprism

(2015) Jinwen Yu et al.   Nature Communications

Recognition of the bacterial alarmone ZMP through long-distance association of two RNA subdomains

(2015) Christopher P Jones et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Structure and mechanism of the T-box riboswitches

(2015) Jinwei Zhang et al.   Wiley Interdisciplinary Reviews-RNA

RNA Self-Assembly and RNA Nanotechnology

(2014) Wade W. Grabow et al.   ACCOUNTS OF CHEMICAL RESEARCH

The Expanding View of RNA and DNA Function

(2014) Ronald R. Breaker et al.   CHEMISTRY & BIOLOGY

A Disconnect between High-Affinity Binding and Efficient Regulation by Antifolates and Purines in the Tetrahydrofolate Riboswitch

(2014) Jeremiah J. Trausch et al.   CHEMISTRY & BIOLOGY

Direct Evaluation of tRNA Aminoacylation Status by the T-Box Riboswitch Using tRNA-mRNA Stacking and Steric Readout

(2014) Jinwei Zhang et al.   MOLECULAR CELL

Crystal structure and mechanistic investigation of the twister ribozyme

(2014) Yijin Liu et al.   Nature Chemical Biology

Functional long-range RNA–RNA interactions in positive-strand RNA viruses

(2014) Beth L. Nicholson et al.   NATURE REVIEWS MICROBIOLOGY

A single-stranded architecture for cotranscriptional folding of RNA nanostructures

(2014) C. Geary et al.   SCIENCE

Dramatic Improvement of Crystals of Large RNAs by Cation Replacement and Dehydration

(2014) Jinwei Zhang et al.   STRUCTURE

A critical base pair in k-turns that confers folding characteristics and correlates with biological function

(2014) Scott A. McPhee et al.   Nature Communications

Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA

(2013) Jinwei Zhang et al.   NATURE

Long-Distance RNA-RNA Interactions in the Coronavirus Genome Form High-Order Structures Promoting Discontinuous RNA Synthesis during Transcription

(2012) P. A. Mateos-Gomez et al.   JOURNAL OF VIROLOGY

Complex shapes self-assembled from single-stranded DNA tiles

(2012) Bryan Wei et al.   NATURE

Three-Dimensional Structures Self-Assembled from DNA Bricks

(2012) Y. Ke et al.   SCIENCE

Predicting coaxial helical stacking in RNA junctions

(2011) Christian Laing et al.   NUCLEIC ACIDS RESEARCH

Structure and assembly of the essential RNA ring component of a viral DNA packaging motor

(2011) F. Ding et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Self-assembling RNA square

(2011) S. M. Dibrov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural basis of differential ligand recognition by two classes of bis-(3'-5')-cyclic dimeric guanosine monophosphate-binding riboswitches

(2011) K. D. Smith et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Nanomaterials Based on DNA

(2010) Nadrian C. Seeman   Annual Review of Biochemistry

NUPACK: Analysis and design of nucleic acid systems

(2010) Joseph N. Zadeh et al.   JOURNAL OF COMPUTATIONAL CHEMISTRY

Use of the spliceosomal protein U1A to facilitate crystallization and structure determination of complex RNAs

(2010) Adrian R. Ferré-D’Amaré   METHODS

Structure of a bacterial ribonuclease P holoenzyme in complex with tRNA

(2010) Nicholas J. Reiter et al.   NATURE

The emerging field of RNA nanotechnology

(2010) Peixuan Guo   Nature Nanotechnology

Structural basis for recognition of S-adenosylhomocysteine by riboswitches

(2010) A. L. Edwards et al.   RNA

Substrate-Assisted Assembly of Interconnected Single-Duplex DNA Nanostructures

(2009) Shogo Hamada et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

From molecular to macroscopic via the rational design of a self-assembled 3D DNA crystal

(2009) Jianping Zheng et al.   NATURE

Tertiary architecture of the Oceanobacillus iheyensis group II intron

(2009) N. Toor et al.   RNA

Apical Loop-Internal Loop RNA Pseudoknots

(2008) Marie-Hélène Mazauric et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Exploring TAR–RNA aptamer loop–loop interaction by X-ray crystallography, UV spectroscopy and surface plasmon resonance

(2008) Isabelle Lebars et al.   NUCLEIC ACIDS RESEARCH

PseudoBase++: an extension of PseudoBase for easy searching, formatting and visualization of pseudoknots

(2008) M. Taufer et al.   NUCLEIC ACIDS RESEARCH

Crystal Structure of a Self-Spliced Group II Intron

(2008) N. Toor et al.   SCIENCE