Pri smORF Peptides Are Wide Mediators of Ecdysone Signaling, Contributing to Shape Spatiotemporal Responses

polished rice mediates ecdysone‐dependent control of Drosophila embryonic organogenesis

(2021) Yuki Taira et al.   GENES TO CELLS

Steroid Hormone Entry into the Brain Requires a Membrane Transporter in Drosophila

(2020) Naoki Okamoto et al.   CURRENT BIOLOGY

Fitness trade-offs incurred by ovary-to-gut steroid signalling in Drosophila

(2020) Sara Mahmoud H. Ahmed et al.   NATURE

Ecdysone steroid hormone remote controls intestinal stem cell fate decisions via the PPARγ-homolog Eip75B in Drosophila

(2020) Lisa Zipper et al.   eLife

Steroid‐dependent switch of OvoL/Shavenbaby controls self‐renewal versus differentiation of intestinal stem cells

(2020) Sandy Al Hayek et al.   EMBO JOURNAL

Direct and widespread role for the nuclear receptor EcR in mediating the response to ecdysone in Drosophila

(2019) Christopher M. Uyehara et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The mlpt/Ubr3/Svb module comprises an ancient developmental switch for embryonic patterning

(2019) Suparna Ray et al.   eLife

Actors with Multiple Roles: Pleiotropic Enhancers and the Paradigm of Enhancer Modularity

(2019) Gonzalo Sabarís et al.   TRENDS IN GENETICS

Novel cis-regulatory regions in ecdysone responsive genes are sufficient to promote gene expression in Drosophila ovarian cells

(2019) Samantha I. McDonald et al.   GENE EXPRESSION PATTERNS

Ecdysone-Induced 3D Chromatin Reorganization Involves Active Enhancers Bound by Pipsqueak and Polycomb

(2019) Irene Gutierrez-Perez et al.   Cell Reports

Comprehensive Analysis of a cis -Regulatory Region Reveals Pleiotropy in Enhancer Function

(2018) Ella Preger-Ben Noon et al.   Cell Reports

Enhancer redundancy provides phenotypic robustness in mammalian development

(2018) Marco Osterwalder et al.   NATURE

A Membrane Transporter Is Required for Steroid Hormone Uptake in Drosophila

(2018) Naoki Okamoto et al.   DEVELOPMENTAL CELL

Shavenbaby and Yorkie mediate Hippo signaling to protect adult stem cells from apoptosis

(2018) Jérôme Bohère et al.   Nature Communications

The punctilious RNA polymerase II core promoter

(2017) Long Vo ngoc et al.   GENES & DEVELOPMENT

Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks

(2016) Enrico Cannavò et al.   CURRENT BIOLOGY

New Peptides Under the s(ORF)ace of the Genome

(2016) Jose I. Pueyo et al.   TRENDS IN BIOCHEMICAL SCIENCES

Diverse Hormone Response Networks in 41 Independent Drosophila Cell Lines

(2016) Marcus Stoiber et al.   G3-Genes Genomes Genetics

A feedback mechanism converts individual cell features into a supracellular ECM structure in Drosophila trachea

(2016) Arzu Öztürk-Çolak et al.   eLife

Low Affinity Binding Site Clusters Confer Hox Specificity and Regulatory Robustness

(2015) Justin Crocker et al.   CELL

Ecdysone regulates morphogenesis and function of malpighian tubules in Drosophila melanogaster through EcR-B2 isoform

(2015) Naveen Kumar Gautam et al.   DEVELOPMENTAL BIOLOGY

Chromatin signatures at Notch-regulated enhancers reveal large-scale changes in H3K56ac upon activation

(2015) L. Skalska et al.   EMBO JOURNAL

Pri sORF peptides induce selective proteasome-mediated protein processing

(2015) J. Zanet et al.   SCIENCE

Dynamics of Dark-Fly Genome Under Environmental Selections

(2015) Minako Izutsu et al.   G3-Genes Genomes Genetics

Identifying (non-)coding RNAs and small peptides: Challenges and opportunities

(2014) Andrea Pauli et al.   BIOESSAYS

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Enzymes for ecdysteroid biosynthesis: their biological functions in insects and beyond

(2014) Ryusuke Niwa et al.   BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY

Hormone-Responsive Enhancer-Activity Maps Reveal Predictive Motifs, Indirect Repression, and Targeting of Closed Chromatin

(2014) Daria Shlyueva et al.   MOLECULAR CELL

Pri peptides are mediators of ecdysone for the temporal control of development

(2014) Hélène Chanut-Delalande et al.   NATURE CELL BIOLOGY

Emerging evidence for functional peptides encoded by short open reading frames

(2014) Shea J. Andrews et al.   NATURE REVIEWS GENETICS

A Halloween gene noppera-bo encodes a glutathione S-transferase essential for ecdysteroid biosynthesis via regulating the behaviour of cholesterol in Drosophila

(2014) Sora Enya et al.   Scientific Reports

JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles

(2013) Anthony Mathelier et al.   NUCLEIC ACIDS RESEARCH

The structure and evolution ofcis-regulatory regions: theshavenbabystory

(2013) David L. Stern et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Coordination of organ growth: principles and outstanding questions from the world of insects

(2013) D.S. Andersen et al.   TRENDS IN CELL BIOLOGY

Genome-wide analyses of Shavenbaby target genes reveals distinct features of enhancer organization

(2013) Delphine Menoret et al.   GENOME BIOLOGY

Ecdysone Control of Developmental Transitions: Lessons from Drosophila Research

(2012) Naoki Yamanaka et al.   Annual Review of Entomology

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Effectors of tridimensional cell morphogenesis and their evolution

(2012) Hélène Chanut-Delalande et al.   SEMINARS IN CELL & DEVELOPMENTAL BIOLOGY

Tarsal-less peptides control Notch signalling through the Shavenbaby transcription factor

(2011) Jose I. Pueyo et al.   DEVELOPMENTAL BIOLOGY

Shadow Enhancers Foster Robustness of Drosophila Gastrulation

(2010) Michael W. Perry et al.   CURRENT BIOLOGY

Non-molting glossy/shroud encodes a short-chain dehydrogenase/reductase that functions in the 'Black Box' of the ecdysteroid biosynthesis pathway

(2010) R. Niwa et al.   DEVELOPMENT

Zona Pellucida Domain Proteins Remodel the Apical Compartment for Localized Cell Shape Changes

(2010) Isabelle Fernandes et al.   DEVELOPMENTAL CELL

Recent advances in understanding mechanisms of insect cuticle differentiation

(2010) Bernard Moussian   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Phenotypic robustness conferred by apparently redundant transcriptional enhancers

(2010) Nicolás Frankel et al.   NATURE

Small Peptides Switch the Transcriptional Activity of Shavenbaby During Drosophila Embryogenesis

(2010) T. Kondo et al.   SCIENCE

DNA-binding properties ofDrosophilaecdysone receptor isoforms and their modification by the heterodimerization partner ultraspiracle

(2009) Simone Braun et al.   ARCHIVES OF INSECT BIOCHEMISTRY AND PHYSIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

The Drosophila nuclear receptors DHR3 and  FTZ-F1 control overlapping developmental responses in late embryos

(2009) A.-F. Ruaud et al.   DEVELOPMENT

Genomic mapping of binding regions for the Ecdysone receptor protein complex

(2009) Z. Gauhar et al.   GENOME RESEARCH

Versatile P[acman] BAC libraries for transgenesis studies in Drosophila melanogaster

(2009) Koen J T Venken et al.   NATURE METHODS

The 11-aminoacid long Tarsal-less peptides trigger a cell signal in Drosophila leg development

(2008) Jose Ignacio Pueyo et al.   DEVELOPMENTAL BIOLOGY

Expression of theDrosophilasecreted cuticle protein 73 (dsc73) requires shavenbaby

(2008) Deborah J. Andrew et al.   DEVELOPMENTAL DYNAMICS

A Novel Ecdysone Receptor Mediates Steroid-Regulated Developmental Events during the Mid-Third Instar of Drosophila

(2008) Benjamin F. B. Costantino et al.   PLoS Genetics