MultiEditR: The first tool for the detection and quantification of RNA editing from Sanger sequencing demonstrates comparable fidelity to RNA-seq
出版年份 2021 全文链接
标题
MultiEditR: The first tool for the detection and quantification of RNA editing from Sanger sequencing demonstrates comparable fidelity to RNA-seq
作者
关键词
RNA editing quantification, RNA editing detection, DNA base editing, RNA modification, RShiny, MultiEditR Editing Index, Epitranscriptomics, APOBEC, ADAR, deaminases
出版物
Molecular Therapy-Nucleic Acids
Volume 25, Issue -, Pages 515-523
出版商
Elsevier BV
发表日期
2021-07-22
DOI
10.1016/j.omtn.2021.07.008
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Step aside CRISPR, RNA editing is taking off
- (2020) Sara Reardon NATURE
- Precise RNA editing by recruiting endogenous ADARs with antisense oligonucleotides
- (2019) Tobias Merkle et al. NATURE BIOTECHNOLOGY
- Programmable RNA editing by recruiting endogenous ADAR using engineered RNAs
- (2019) Liang Qu et al. NATURE BIOTECHNOLOGY
- Genome-wide quantification of ADAR adenosine-to-inosine RNA editing activity
- (2019) Shalom Hillel Roth et al. NATURE METHODS
- Highly efficient multiplex human T cell engineering without double-strand breaks using Cas9 base editors
- (2019) Beau R. Webber et al. Nature Communications
- Efficient and precise editing of endogenous transcripts with SNAP-tagged ADARs
- (2018) Paul Vogel et al. NATURE METHODS
- A-to-I RNA editing — immune protector and transcriptome diversifier
- (2018) Eli Eisenberg et al. NATURE REVIEWS GENETICS
- Base modifications affecting RNA polymerase and reverse transcriptase fidelity
- (2018) Vladimir Potapov et al. NUCLEIC ACIDS RESEARCH
- RNA Editors, Cofactors, and mRNA Targets: An Overview of the C-to-U RNA Editing Machinery and Its Implication in Human Disease
- (2018) Taga Lerner et al. Genes
- ADAR1 Editing and its Role in Cancer
- (2018) Li-Di Xu et al. Genes
- Abundant off-target edits from site-directed RNA editing can be reduced by nuclear localization of the editing enzyme
- (2017) Isabel C. Vallecillo-Viejo et al. RNA Biology
- Identification of human RNA editing sites: A historical perspective
- (2016) Gokul Ramaswami et al. METHODS
- Isoforms of RNA-Editing Enzyme ADAR1 Independently Control Nucleic Acid Sensor MDA5-Driven Autoimmunity and Multi-organ Development
- (2015) Kathleen Pestal et al. IMMUNITY
- Flow-cytometric visualization of C>U mRNA editing reveals the dynamics of the process in live cells
- (2015) Francesco Severi et al. RNA Biology
- Poly peak parser: Method and software for identification of unknown indels using sanger sequencing of polymerase chain reaction products
- (2014) Jonathon T. Hill et al. DEVELOPMENTAL DYNAMICS
- Improved vectors and genome-wide libraries for CRISPR screening
- (2014) Neville E Sanjana et al. NATURE METHODS
- Detection Theory in Identification of RNA-DNA Sequence Differences Using RNA-Sequencing
- (2014) Jonathan M. Toung et al. PLoS One
- A genome-wide map of hyper-edited RNA reveals numerous new sites
- (2014) Hagit T. Porath et al. Nature Communications
- REDItools: high-throughput RNA editing detection made easy
- (2013) Ernesto Picardi et al. BIOINFORMATICS
- Genome engineering using the CRISPR-Cas9 system
- (2013) F Ann Ran et al. Nature Protocols
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- Primer-BLAST: A tool to design target-specific primers for polymerase chain reaction
- (2012) Jian Ye et al. BMC BIOINFORMATICS
- Transcriptome-wide sequencing reveals numerous APOBEC1 mRNA-editing targets in transcript 3′ UTRs
- (2011) Brad R Rosenberg et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started