Alterations in gut microbiota linked to provenance, sex, and chronic wasting disease in white-tailed deer (Odocoileus virginianus)

Consequences of Domestication on Gut Microbiome: A Comparative Study Between Wild Gaur and Domestic Mithun

(2020) Vandana R. Prabhu et al.   Frontiers in Microbiology

Protective effects of Akkermansia muciniphila on cognitive deficits and amyloid pathology in a mouse model of Alzheimer’s disease

(2020) Zihao Ou et al.   Nutrition & Diabetes

The Controversial Role of Human Gut Lachnospiraceae

(2020) Mirco Vacca et al.   Microorganisms

Microbial Stimulation Reverses the Age-Related Decline in M Cells in Aged Mice

(2020) David S. Donaldson et al.   iScience

Rare gut microbiota associated with breeding success, hormone metabolites and ovarian cycle phase in the critically endangered eastern black rhino

(2019) Rachael E. Antwis et al.   Microbiome

Gut microbiota in wild and captive Guizhou snub‐nosed monkeys, Rhinopithecus brelichi

(2019) Vanessa L. Hale et al.   AMERICAN JOURNAL OF PRIMATOLOGY

Dynamic Alterations in Yak Rumen Bacteria Community and Metabolome Characteristics in Response to Feed Type

(2019) Chang Liu et al.   Frontiers in Microbiology

Akkermansia muciniphila is a promising probiotic

(2019) Ting Zhang et al.   Microbial Biotechnology

Potential role of rumen microbiota in altering average daily gain and feed efficiency in meat goats fed simple and mixed pastures using bacterial tag-encoded FLX amplicon pyrosequencing1

(2019) Byeng Ryel Min et al.   JOURNAL OF ANIMAL SCIENCE

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Dysbiosis of gut microbiota in a selected population of Parkinson's patients

(2019) Daniele Pietrucci et al.   PARKINSONISM & RELATED DISORDERS

Gut microbiome differences between wild and captive black rhinoceros – implications for rhino health

(2019) Keylie M. Gibson et al.   Scientific Reports

The role of gut microbiota in shaping the relapse-remitting and chronic-progressive forms of multiple sclerosis in mouse models

(2019) K. Alexa Orr Gandy et al.   Scientific Reports

Microbiome Influence in the Pathogenesis of Prion and Alzheimer’s Diseases

(2019) Valeria D’Argenio et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Impact of supplemental winter feeding on ruminal microbiota of roe deer Capreolus capreolus

(2019) Sara Ricci et al.   WILDLIFE BIOLOGY

Analysis of the Gut Microbiome of Wild and Captive Père David’s Deer

(2019) Cheng-He Sun et al.   Frontiers in Microbiology

Comparative Study of Gut Microbiota in Wild and Captive Giant Pandas (Ailuropoda melanoleuca)

(2019) Wei Guo et al.   Genes

Estimating relative CWD susceptibility and disease progression in farmed white-tailed deer with rare PRNP alleles

(2019) Nicholas J. Haley et al.   PLoS One

Host phylogeny, diet, and habitat differentiate the gut microbiomes of Darwin’s finches on Santa Cruz Island

(2019) Wesley T. Loo et al.   Scientific Reports

The gut microbiome of nonhuman primates: Lessons in ecology and evolution

(2018) Jonathan B. Clayton et al.   AMERICAN JOURNAL OF PRIMATOLOGY

Good Bug, Bad Bug: Breaking through Microbial Stereotypes

(2018) Mihai Cirstea et al.   Cell Host & Microbe

Associations Between Nutrition, Gut Microbiome, and Health in A Novel Nonhuman Primate Model

(2018) Jonathan B. Clayton et al.   Scientific Reports

Environment dominates over host genetics in shaping human gut microbiota

(2018) Daphna Rothschild et al.   NATURE

Bottoms up: the role of gut microbiota in brain health

(2018) Nina Radisavljevic et al.   ENVIRONMENTAL MICROBIOLOGY

Unraveling gut microbiota in Parkinson's disease and atypical parkinsonism

(2018) Michela Barichella et al.   MOVEMENT DISORDERS

A physics-based model explains the prion-like features of neurodegeneration in Alzheimer’s disease, Parkinson’s disease, and amyotrophic lateral sclerosis

(2018) Johannes Weickenmeier et al.   JOURNAL OF THE MECHANICS AND PHYSICS OF SOLIDS

Prion disease pathogenesis in the absence of the commensal microbiota

(2017) Barry M. Bradford et al.   JOURNAL OF GENERAL VIROLOGY

Intestinal Microbial Community Dynamics of White-Tailed Deer (Odocoileus virginianus) in an Agroecosystem

(2017) M. Lisette Delgado et al.   MICROBIAL ECOLOGY

Akkermansia muciniphila and its role in regulating host functions

(2017) Muriel Derrien et al.   MICROBIAL PATHOGENESIS

Parkinson's disease and Parkinson's disease medications have distinct signatures of the gut microbiome

(2017) Erin M. Hill-Burns et al.   MOVEMENT DISORDERS

The nasal and gut microbiome in Parkinson's disease and idiopathic rapid eye movement sleep behavior disorder

(2017) Anna Heintz-Buschart et al.   MOVEMENT DISORDERS

Interactions between the microbiota, immune and nervous systems in health and disease

(2017) Thomas C Fung et al.   NATURE NEUROSCIENCE

Gut bacteria from multiple sclerosis patients modulate human T cells and exacerbate symptoms in mouse models

(2017) Egle Cekanaviciute et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gut microbiota from multiple sclerosis patients enables spontaneous autoimmune encephalomyelitis in mice

(2017) Kerstin Berer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Strategies to promote abundance of Akkermansia muciniphila , an emerging probiotics in the gut, evidence from dietary intervention studies

(2017) Kequan Zhou   Journal of Functional Foods

Chronic wasting disease: Emerging prions and their potential risk

(2017) Samia Hannaoui et al.   PLoS Pathogens

Comparison of the gut microbiota composition between wild and captive sika deer (Cervus nippon hortulorum) from feces by high-throughput sequencing

(2017) Yu Guan et al.   AMB Express

Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study

(2017) Dae-Wook Kang et al.   Microbiome

Butyrate-producing bacteria supplemented in vitro to Crohn’s disease patient microbiota increased butyrate production and enhanced intestinal epithelial barrier integrity

(2017) Annelies Geirnaert et al.   Scientific Reports

Gut microbiome alterations in Alzheimer’s disease

(2017) Nicholas M. Vogt et al.   Scientific Reports

Induction of Colonic M Cells during Intestinal Inflammation

(2016) Kaila M. Bennett et al.   AMERICAN JOURNAL OF PATHOLOGY

Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson’s Disease

(2016) Timothy R. Sampson et al.   CELL

Chronic wasting disease in white-tailed deer: infection, mortality, and implications for heterogeneous transmission

(2016) Michael D. Samuel et al.   ECOLOGY

The influence of the commensal and pathogenic gut microbiota on prion disease pathogenesis

(2016) David S. Donaldson et al.   JOURNAL OF GENERAL VIROLOGY

Colonic inflammation accompanies an increase of β-catenin signaling and Lachnospiraceae / Streptococcaceae bacteria in the hind gut of high-fat diet-fed mice

(2016) Huawei Zeng et al.   JOURNAL OF NUTRITIONAL BIOCHEMISTRY

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Increased Abundance of M Cells in the Gut Epithelium Dramatically Enhances Oral Prion Disease Susceptibility

(2016) David S. Donaldson et al.   PLoS Pathogens

Social behavior shapes the chimpanzee pan-microbiome

(2016) A. H. Moeller et al.   Science Advances

Adult Hippocampal Neurogenesis Is Regulated by the Microbiome

(2015) Ebere S. Ogbonnaya et al.   BIOLOGICAL PSYCHIATRY

Collecting Fecal Samples for Microbiome Analyses in Epidemiology Studies

(2015) R. Sinha et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

The Prion Hypothesis of Parkinson’s Disease

(2015) Yaping Chu et al.   Current Neurology and Neuroscience Reports

Host microbiota constantly control maturation and function of microglia in the CNS

(2015) Daniel Erny et al.   NATURE NEUROSCIENCE

Alzheimer's and Parkinson's diseases: The prion concept in relation to assembled A , tau, and  -synuclein

(2015) M. Goedert   SCIENCE

Parkinson's disease as a member of Prion-like disorders

(2015) Maria Eugenia Herva et al.   VIRUS RESEARCH

Chronic Wasting Disease of Cervids: Current Knowledge and Future Perspectives

(2015) Nicholas J. Haley et al.   Annual Review of Animal Biosciences

Evaluating variation in human gut microbiota profiles due to DNA extraction method and inter-subject differences

(2015) Brett Wagner Mackenzie et al.   Frontiers in Microbiology

Human Genetics Shape the Gut Microbiome

(2014) Julia K. Goodrich et al.   CELL

Comprehensive Gene Expression Profiling of Peyer's Patch M Cells, Villous M-Like Cells, and Intestinal Epithelial Cells

(2014) K. Terahara et al.   JOURNAL OF IMMUNOLOGY

The Gut Microbiota Appears to Compensate for Seasonal Diet Variation in the Wild Black Howler Monkey (Alouatta pigra)

(2014) Katherine R. Amato et al.   MICROBIAL ECOLOGY

Parkinson's Disease and Alpha Synuclein: Is Parkinson's Disease a Prion-Like Disorder?

(2013) C. Warren Olanow et al.   MOVEMENT DISORDERS

Microfold (M) cells: important immunosurveillance posts in the intestinal epithelium

(2013) N A Mabbott et al.   Mucosal Immunology

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

Control of pathogens and pathobionts by the gut microbiota

(2013) Nobuhiko Kamada et al.   NATURE IMMUNOLOGY

The SILVA and “All-species Living Tree Project (LTP)” taxonomic frameworks

(2013) Pelin Yilmaz et al.   NUCLEIC ACIDS RESEARCH

Commensal Akkermansia muciniphila Exacerbates Gut Inflammation in Salmonella Typhimurium-Infected Gnotobiotic Mice

(2013) Bhanu Priya Ganesh et al.   PLoS One

Salmonella Transforms Follicle-Associated Epithelial Cells into M Cells to Promote Intestinal Invasion

(2012) Amin Tahoun et al.   Cell Host & Microbe

Microbes inside—from diversity to function: the case of Akkermansia

(2012) Clara Belzer et al.   ISME Journal

M cell-depletion blocks oral prion disease pathogenesis

(2012) D S Donaldson et al.   Mucosal Immunology

Structure, function and diversity of the healthy human microbiome

(2012)   NATURE

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Chronic Wasting Disease in a Wisconsin White-Tailed Deer Farm

(2011) Delwyn P. Keane et al.   JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION

Normal gut microbiota modulates brain development and behavior

(2011) R. D. Heijtz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Microbial ecology of the murine gut associated with the development of dextran sodium sulfate-induced colitis

(2010) Nabeetha A. Nagalingam et al.   INFLAMMATORY BOWEL DISEASES

Dominant and diet-responsive groups of bacteria within the human colonic microbiota

(2010) Alan W Walker et al.   ISME Journal

Prion transmission

(2010) Kevin C. Gough et al.   Prion

Protein Misfolding and Aggregation in Parkinson's Disease

(2009) Jeanne M.M. Tan et al.   ANTIOXIDANTS & REDOX SIGNALING

M-cells: origin, morphology and role in mucosal immunity and microbial pathogenesis

(2009) Sinead C. Corr et al.   FEMS IMMUNOLOGY AND MEDICAL MICROBIOLOGY

Bacterial Colitis Increases Susceptibility to Oral Prion Disease

(2008) Christina J. Sigurdson et al.   JOURNAL OF INFECTIOUS DISEASES