A genomic surveillance framework and genotyping tool for Klebsiella pneumoniae and its related species complex

Population genomics of Klebsiella pneumoniae

(2020) Kelly L. Wyres et al.   NATURE REVIEWS MICROBIOLOGY

Genomic surveillance for hypervirulence and multi-drug resistance in invasive Klebsiella pneumoniae from South and Southeast Asia

(2020) Kelly L. Wyres et al.   Genome Medicine

A genotype-phenotype correlation study of SHV β-lactamases - new insight into SHV resistance profiles

(2020) Svetlana Neubauer et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

A complete domain-to-species taxonomy for Bacteria and Archaea

(2020) Donovan H. Parks et al.   NATURE BIOTECHNOLOGY

Preterm infants harbour diverse Klebsiella populations, including atypical species that encode and produce an array of antimicrobial resistance- and virulence-associated factors

(2020) Yuhao Chen et al.   Microbial Genomics

Fine capsule variation affects bacteriophage susceptibility in Klebsiella pneumoniae ST258

(2020) Carola Venturini et al.   FASEB JOURNAL

Modular prophage interactions driven by capsule serotype select for capsule loss under phage predation

(2020) Jorge A. M. de Sousa et al.   ISME Journal

The Small Protein RmpD Drives Hypermucoviscosity in Klebsiella pneumoniae

(2020) Kimberly A. Walker et al.   mBio

Identification of three podoviruses infecting Klebsiella encoding capsule depolymerases that digest specific capsular types

(2019) Yi-Jiun Pan et al.   Microbial Biotechnology

High prevalence of KPC-2-producing hypervirulent Klebsiella pneumoniae causing meningitis in Eastern China

(2019) Min Xu et al.   Infection and Drug Resistance

Host adaptation and convergent evolution increases antibiotic resistance without loss of virulence in a major human pathogen

(2019) Alicia Fajardo-Lubián et al.   PLoS Pathogens

Convergence of virulence and MDR in a single plasmid vector in MDR Klebsiella pneumoniae ST15

(2019) Margaret M C Lam et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Genomic analysis of Klebsiella pneumoniae isolates from Malawi reveals acquisition of multiple ESBL determinants across diverse lineages

(2019) Patrick Musicha et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Worsening epidemiological situation of carbapenemase-producing Enterobacteriaceae in Europe, assessment by national experts from 37 countries, July 2018

(2019) Alma Brolund et al.   Eurosurveillance

β-Lactamases and β-Lactamase Inhibitors in the 21st Century

(2019) Catherine L. Tooke et al.   JOURNAL OF MOLECULAR BIOLOGY

Distinct evolutionary dynamics of horizontal gene transfer in drug resistant and virulent clones of Klebsiella pneumoniae

(2019) Kelly L. Wyres et al.   PLoS Genetics

Epidemic of carbapenem-resistant Klebsiella pneumoniae in Europe is driven by nosocomial spread

(2019) Sophia David et al.   Nature Microbiology

Treatment Options for Colistin Resistant Klebsiella pneumoniae: Present and Future

(2019) Petrosillo et al.   Journal of Clinical Medicine

Caribbean multi-centre study of Klebsiella pneumoniae: whole-genome sequencing, antimicrobial resistance and virulence factors

(2019) Eva Heinz et al.   Microbial Genomics

Stunted microbiota and opportunistic pathogen colonization in caesarean-section birth

(2019) Yan Shao et al.   NATURE

OmpK36-mediated Carbapenem resistance attenuates ST258 Klebsiella pneumoniae in vivo

(2019) Joshua L. C. Wong et al.   Nature Communications

Multiple Klebsiella pneumoniae KPC Clones Contribute to an Extended Hospital Outbreak

(2019) Carolina Ferrari et al.   Frontiers in Microbiology

Klebsiella pneumoniae as a key trafficker of drug resistance genes from environmental to clinically important bacteria

(2018) Kelly L .Wyres et al.   CURRENT OPINION IN MICROBIOLOGY

Global forecast of antimicrobial resistance in invasive isolates of Escherichia coli and Klebsiella pneumoniae

(2018) Gerardo Alvarez-Uria et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes

(2018) Ryan R. Wick et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Identification of biomarkers for the differentiation of hypervirulent Klebsiella pneumoniae from classical K. pneumoniae

(2018) Thomas A Russo et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Impact of Klebsiella pneumoniae in lower gastrointestinal tract diseases

(2018) Christina Parvinder Kaur et al.   Journal of Digestive Diseases

A fatal outbreak of ST11 carbapenem-resistant hypervirulent Klebsiella pneumoniae in a Chinese hospital: a molecular epidemiological study

(2018) Danxia Gu et al.   LANCET INFECTIOUS DISEASES

Emergence of carbapenem-resistant hypervirulent Klebsiella pneumoniae

(2018) Marcus Ho Yin Wong et al.   LANCET INFECTIOUS DISEASES

Emergence of carbapenem-resistant hypervirulent Klebsiella pneumoniae

(2018) Hong Yao et al.   LANCET INFECTIOUS DISEASES

Convergence of carbapenem-resistance and hypervirulence in Klebsiella pneumoniae

(2018) Liang Chen et al.   LANCET INFECTIOUS DISEASES

Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination

(2018) Margaret M. C. Lam et al.   Nature Communications

Population Structure, Antibiotic Resistance, and Uropathogenicity of Klebsiella variicola

(2018) Robert F. Potter et al.   mBio

Tracking key virulence loci encoding aerobactin and salmochelin siderophore synthesis in Klebsiella pneumoniae

(2018) Margaret M. C. Lam et al.   Genome Medicine

metaSPAdes: a new versatile metagenomic assembler

(2017) Sergey Nurk et al.   GENOME RESEARCH

Population Genomic Analysis of 1,777 Extended-Spectrum Beta-Lactamase-Producing Klebsiella pneumoniae Isolates, Houston, Texas: Unexpected Abundance of Clonal Group 307

(2017) S. Wesley Long et al.   mBio

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

(2017) Ryan R. Wick et al.   PLoS Computational Biology

Spectrum of excess mortality due to carbapenem-resistant Klebsiella pneumoniae infections

(2016) C. Hauck et al.   CLINICAL MICROBIOLOGY AND INFECTION

Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data

(2016) Philip T. L. C. Clausen et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Predictability of Phenotype in Relation to Common β-Lactam Resistance Mechanisms in Escherichia coli and Klebsiella pneumoniae

(2016) Alex Agyekum et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Klebsiella pneumoniae Population Genomics and Antimicrobial-Resistant Clones

(2016) Kelly L. Wyres et al.   TRENDS IN MICROBIOLOGY

Molecular Epidemiology of Colonizing and Infecting Isolates of Klebsiella pneumoniae

(2016) Rebekah M. Martin et al.   mSphere

MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets

(2015) Yu-Wei Wu et al.   BIOINFORMATICS

Aerobactin, but Not Yersiniabactin, Salmochelin, or Enterobactin, Enables the Growth/Survival of Hypervirulent (Hypermucoviscous) Klebsiella pneumoniaeEx VivoandIn Vivo

(2015) Thomas A. Russo et al.   INFECTION AND IMMUNITY

Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance inKlebsiella pneumoniae, an urgent threat to public health

(2015) Kathryn E. Holt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Low prevalence of rmpA and high tendency of rmpA mutation correspond to low virulence of extended spectrum β-lactamase-producing klebsiella pneumoniae isolates

(2015) Wen-Liang Yu et al.   Virulence

In VivoEvolution to Colistin Resistance by PmrB Sensor Kinase Mutation in KPC-Producing Klebsiella pneumoniae Is Associated with Low-Dosage Colistin Treatment

(2014) Antonio Cannatelli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

MgrB Inactivation Is a Common Mechanism of Colistin Resistance in KPC-Producing Klebsiella pneumoniae of Clinical Origin

(2014) Antonio Cannatelli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Prediction of major antibiotic resistance in Escherichia coli and Klebsiella pneumoniae in Singapore, USA and China using a limited set of gene targets

(2014) Andrew N. Ginn et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Carbapenemase-producing Klebsiella pneumoniae: molecular and genetic decoding

(2014) Liang Chen et al.   TRENDS IN MICROBIOLOGY

Limited diversity in the gene pool allows prediction of third-generation cephalosporin and aminoglycoside resistance in Escherichia coli and Klebsiella pneumoniae

(2013) Andrew N. Ginn et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data

(2013) N. Stoesser et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

wzi Gene Sequencing, a Rapid Method for Determination of Capsular Type for Klebsiella Strains

(2013) S. Brisse et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Hypervirulent (hypermucoviscous)Klebsiella pneumoniae

(2013) Alyssa S. Shon et al.   Virulence

Seroepidemiology of Klebsiella pneumoniae colonizing the intestinal tract of healthy chinese and overseas chinese adults in Asian countries

(2012) Yi-Tsung Lin et al.   BMC MICROBIOLOGY

Klebsiella pneumoniae liver abscess: a new invasive syndrome

(2012) L Kristopher Siu et al.   LANCET INFECTIOUS DISEASES

Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance

(2011) A.-P. Magiorakos et al.   CLINICAL MICROBIOLOGY AND INFECTION

Fecal carriage of serotype K1 Klebsiella pneumoniae ST23 strains closely related to liver abscess isolates in Koreans living in Korea

(2011) D. R. Chung et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Klebsiella pneumoniae Yersiniabactin Promotes Respiratory Tract Infection through Evasion of Lipocalin 2

(2011) Michael A. Bachman et al.   INFECTION AND IMMUNITY

Molecular epidemiology of extended-spectrum β-lactamase-producing Klebsiella pneumoniae strains in a university hospital in Tunis, Tunisia, 1999–2005

(2009) D. Elhani et al.   CLINICAL MICROBIOLOGY AND INFECTION

Virulent Clones of Klebsiella pneumoniae: Identification and Evolutionary Scenario Based on Genomic and Phenotypic Characterization

(2009) Sylvain Brisse et al.   PLoS One