Preterm infants harbour diverse Klebsiella populations, including atypical species that encode and produce an array of antimicrobial resistance- and virulence-associated factors
出版年份 2020 全文链接
标题
Preterm infants harbour diverse Klebsiella populations, including atypical species that encode and produce an array of antimicrobial resistance- and virulence-associated factors
作者
关键词
-
出版物
Microbial Genomics
Volume -, Issue -, Pages -
出版商
Microbiology Society
发表日期
2020-05-21
DOI
10.1099/mgen.0.000377
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.
- (2019) Carla Rodrigues et al. RESEARCH IN MICROBIOLOGY
- Incidence of necrotising enterocolitis before and after introducing routine prophylactic Lactobacillus and Bifidobacterium probiotics
- (2019) Claire Robertson et al. Archives of Disease in Childhood-Fetal and Neonatal Edition
- Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov.
- (2019) Cristina Merla et al. Frontiers in Microbiology
- Spread of Plasmid-Encoded NDM-1 and GES-5 Carbapenemases among Extensively Drug-Resistant and Pandrug-Resistant Clinical Enterobacteriaceae in Durban, South Africa
- (2018) Torunn Pedersen et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Role of association of OmpK35 and OmpK36 alteration and bla ESBL and/or bla AmpC genes in conferring carbapenem resistance among non-carbapenemase-producing Klebsiella pneumoniae
- (2018) Zaineb Hamzaoui et al. INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS
- Description of Klebsiella grimontii sp. nov.
- (2018) Virginie Passet et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
- (2018) Jongsik Chun et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes
- (2018) Ryan R. Wick et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Virulence genes in isolates of Klebsiella pneumoniae from the UK during 2016, including among carbapenemase gene-positive hypervirulent K1-ST23 and ‘non-hypervirulent’ types ST147, ST15 and ST383
- (2018) Jane F. Turton et al. JOURNAL OF MEDICAL MICROBIOLOGY
- Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination
- (2018) Margaret M. C. Lam et al. Nature Communications
- The Microbiome and Metabolome of Preterm Infant Stool Are Personalized and Not Driven by Health Outcomes, Including Necrotizing Enterocolitis and Late-Onset Sepsis
- (2018) Stephen Wandro et al. mSphere
- Early life colonization of the human gut: microbes matter everywhere
- (2018) Katri Korpela et al. CURRENT OPINION IN MICROBIOLOGY
- Klebsiella huaxiensis sp. nov., recovered from human urine
- (2018) Yiyi Hu et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
- (2018) Chirag Jain et al. Nature Communications
- Preterm Infant-Associated Clostridium tertium, Clostridium cadaveris, and Clostridium paraputrificum Strains: Genomic and Evolutionary Insights
- (2017) Raymond Kiu et al. Genome Biology and Evolution
- Population Structure of Multidrug-Resistant Klebsiella oxytoca within Hospitals across the United Kingdom and Ireland Identifies Sharing of Virulence and Resistance Genes with K. pneumoniae
- (2017) Danesh Moradigaravand et al. Genome Biology and Evolution
- Identification and genomic characterization of a KPC-2-, NDM-1- and NDM-5-producing Klebsiella michiganensis isolate
- (2017) Beiwen Zheng et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
- (2017) Robert M Bowers et al. NATURE BIOTECHNOLOGY
- Low Microbial Diversity and Abnormal Microbial Succession Is Associated with Necrotizing Enterocolitis in Preterm Infants
- (2017) Priscila T. Dobbler et al. Frontiers in Microbiology
- Intestinal dysbiosis in preterm infants preceding necrotizing enterocolitis: a systematic review and meta-analysis
- (2017) Mohan Pammi et al. Microbiome
- The Developing Microbiome of the Preterm Infant
- (2016) Mara E. DiBartolomeo et al. CLINICAL THERAPEUTICS
- Centrifuge: rapid and sensitive classification of metagenomic sequences
- (2016) Daehwan Kim et al. GENOME RESEARCH
- Genome-based phylogeny and taxonomy of the ‘Enterobacteriales’: proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov.
- (2016) INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Strain-level microbial epidemiology and population genomics from shotgun metagenomics
- (2016) Matthias Scholz et al. NATURE METHODS
- CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database
- (2016) Baofeng Jia et al. NUCLEIC ACIDS RESEARCH
- Necrotizing enterocolitis and preterm infant gut bacteria
- (2016) Barbara B. Warner et al. Seminars in Fetal & Neonatal Medicine
- Metagenomic Sequencing with Strain-Level Resolution Implicates Uropathogenic E. coli in Necrotizing Enterocolitis and Mortality in Preterm Infants
- (2016) Doyle V. Ward et al. Cell Reports
- Roary: rapid large-scale prokaryote pan genome analysis
- (2015) Andrew J. Page et al. BIOINFORMATICS
- Klebsiella pneumoniaesurvives within macrophages by avoiding delivery to lysosomes
- (2015) Victoria Cano et al. CELLULAR MICROBIOLOGY
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- VFDB 2016: hierarchical and refined dataset for big data analysis—10 years on
- (2015) Lihong Chen et al. NUCLEIC ACIDS RESEARCH
- Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance inKlebsiella pneumoniae, an urgent threat to public health
- (2015) Kathryn E. Holt et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development
- (2015) Tali Raveh-Sadka et al. eLife
- Anvi’o: an advanced analysis and visualization platform for ‘omics data
- (2015) A. Murat Eren et al. PeerJ
- Late-Onset Bloodstream Infection and Perturbed Maturation of the Gastrointestinal Microbiota in Premature Infants
- (2015) Alexander G. Shaw et al. PLoS One
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Dysbiosis Anticipating Necrotizing Enterocolitis in Very Premature Infants
- (2014) K. Sim et al. CLINICAL INFECTIOUS DISEASES
- Genotypes of Klebsiella oxytoca Isolates from Patients with Nosocomial Pneumonia Are Distinct from Those of Isolates from Patients with Antibiotic-Associated Hemorrhagic Colitis
- (2014) K. A. T. Herzog et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Early Empiric Antibiotic Use in Preterm Infants Is Associated with Lower Bacterial Diversity and Higher Relative Abundance of Enterobacter
- (2014) Corryn Greenwood et al. JOURNAL OF PEDIATRICS
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- Role of Novel Multidrug Efflux Pump Involved in Drug Resistance in Klebsiella pneumoniae
- (2014) Vijaya Bharathi Srinivasan et al. PLoS One
- KpnEF, a New Member of the Klebsiella pneumoniae Cell Envelope Stress Response Regulon, Is an SMR-Type Efflux Pump Involved in Broad-Spectrum Antimicrobial Resistance
- (2013) Vijaya Bharathi Srinivasan et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Distortions in Development of Intestinal Microbiota Associated with Late Onset Sepsis in Preterm Infants
- (2013) Volker Mai et al. PLoS One
- Intestinal Microbial Ecology and Environmental Factors Affecting Necrotizing Enterocolitis
- (2013) Roberto Murgas Torrazza et al. PLoS One
- The human microbiome as a reservoir of antimicrobial resistance
- (2013) John Penders et al. Frontiers in Microbiology
- Bacterial community structure and functional contributions to emergence of health or necrotizing enterocolitis in preterm infants
- (2013) Erika C Claud et al. Microbiome
- Klebsiella michiganensis sp. nov., A New Bacterium Isolated from a Tooth Brush Holder
- (2012) Ratul Saha et al. CURRENT MICROBIOLOGY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Metagenomic microbial community profiling using unique clade-specific marker genes
- (2012) Nicola Segata et al. NATURE METHODS
- Genetic Mechanisms of Antimicrobial Resistance of Acinetobacter Baumannii
- (2011) John S Esterly et al. ANNALS OF PHARMACOTHERAPY
- Klebsiella pneumoniae Yersiniabactin Promotes Respiratory Tract Infection through Evasion of Lipocalin 2
- (2011) Michael A. Bachman et al. INFECTION AND IMMUNITY
- Neonatal infections in England: the NeonIN surveillance network
- (2010) S. Vergnano et al. Archives of Disease in Childhood-Fetal and Neonatal Edition
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- PCR characterization and typing of Klebsiella pneumoniae using capsular type-specific, variable number tandem repeat and virulence gene targets
- (2010) J. F. Turton et al. JOURNAL OF MEDICAL MICROBIOLOGY
- Evolution of MRSA During Hospital Transmission and Intercontinental Spread
- (2010) S. R. Harris et al. SCIENCE
- The Battle for Iron between Bacterial Pathogens and Their Vertebrate Hosts
- (2010) Eric P. Skaar PLoS Pathogens
- 16S rRNA gene-based analysis of fecal microbiota from preterm infants with and without necrotizing enterocolitis
- (2009) Yunwei Wang et al. ISME Journal
- CRP Regulator Modulates Multidrug Resistance of Escherichia coli by Repressing the mdtEF Multidrug Efflux Genes
- (2009) Kunihiko Nishino et al. JOURNAL OF ANTIBIOTICS
- Molecular identification of blaSHV, blaLEN and blaOKP β-lactamase genes in Klebsiella pneumoniae by bi-directional sequencing of universal SP6- and T7-sequence-tagged blaSHV-PCR amplicons
- (2009) Maria Tärnberg et al. MOLECULAR AND CELLULAR PROBES
- FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
- (2009) M. N. Price et al. MOLECULAR BIOLOGY AND EVOLUTION
- Shifting the genomic gold standard for the prokaryotic species definition
- (2009) Michael Richter et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search