Preterm infants harbour diverse Klebsiella populations, including atypical species that encode and produce an array of antimicrobial resistance- and virulence-associated factors
出版年份 2020 全文链接
标题
Preterm infants harbour diverse Klebsiella populations, including atypical species that encode and produce an array of antimicrobial resistance- and virulence-associated factors
作者
关键词
-
出版物
Microbial Genomics
Volume -, Issue -, Pages -
出版商
Microbiology Society
发表日期
2020-05-21
DOI
10.1099/mgen.0.000377
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- Description of Klebsiella africanensis sp. nov., Klebsiella variicola subsp. tropicalensis subsp. nov. and Klebsiella variicola subsp. variicola subsp. nov.
- (2019) Carla Rodrigues et al. RESEARCH IN MICROBIOLOGY
- Incidence of necrotising enterocolitis before and after introducing routine prophylactic Lactobacillus and Bifidobacterium probiotics
- (2019) Claire Robertson et al. Archives of Disease in Childhood-Fetal and Neonatal Edition
- Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov.
- (2019) Cristina Merla et al. Frontiers in Microbiology
- Spread of Plasmid-Encoded NDM-1 and GES-5 Carbapenemases among Extensively Drug-Resistant and Pandrug-Resistant Clinical Enterobacteriaceae in Durban, South Africa
- (2018) Torunn Pedersen et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Role of association of OmpK35 and OmpK36 alteration and bla ESBL and/or bla AmpC genes in conferring carbapenem resistance among non-carbapenemase-producing Klebsiella pneumoniae
- (2018) Zaineb Hamzaoui et al. INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS
- Description of Klebsiella grimontii sp. nov.
- (2018) Virginie Passet et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
- (2018) Jongsik Chun et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Kaptive Web: User-Friendly Capsule and Lipopolysaccharide Serotype Prediction for Klebsiella Genomes
- (2018) Ryan R. Wick et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Virulence genes in isolates of Klebsiella pneumoniae from the UK during 2016, including among carbapenemase gene-positive hypervirulent K1-ST23 and ‘non-hypervirulent’ types ST147, ST15 and ST383
- (2018) Jane F. Turton et al. JOURNAL OF MEDICAL MICROBIOLOGY
- Population genomics of hypervirulent Klebsiella pneumoniae clonal-group 23 reveals early emergence and rapid global dissemination
- (2018) Margaret M. C. Lam et al. Nature Communications
- The Microbiome and Metabolome of Preterm Infant Stool Are Personalized and Not Driven by Health Outcomes, Including Necrotizing Enterocolitis and Late-Onset Sepsis
- (2018) Stephen Wandro et al. mSphere
- Early life colonization of the human gut: microbes matter everywhere
- (2018) Katri Korpela et al. CURRENT OPINION IN MICROBIOLOGY
- Klebsiella huaxiensis sp. nov., recovered from human urine
- (2018) Yiyi Hu et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
- (2018) Chirag Jain et al. Nature Communications
- Preterm Infant-Associated Clostridium tertium, Clostridium cadaveris, and Clostridium paraputrificum Strains: Genomic and Evolutionary Insights
- (2017) Raymond Kiu et al. Genome Biology and Evolution
- Population Structure of Multidrug-Resistant Klebsiella oxytoca within Hospitals across the United Kingdom and Ireland Identifies Sharing of Virulence and Resistance Genes with K. pneumoniae
- (2017) Danesh Moradigaravand et al. Genome Biology and Evolution
- Identification and genomic characterization of a KPC-2-, NDM-1- and NDM-5-producing Klebsiella michiganensis isolate
- (2017) Beiwen Zheng et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
- (2017) Robert M Bowers et al. NATURE BIOTECHNOLOGY
- Low Microbial Diversity and Abnormal Microbial Succession Is Associated with Necrotizing Enterocolitis in Preterm Infants
- (2017) Priscila T. Dobbler et al. Frontiers in Microbiology
- Intestinal dysbiosis in preterm infants preceding necrotizing enterocolitis: a systematic review and meta-analysis
- (2017) Mohan Pammi et al. Microbiome
- The Developing Microbiome of the Preterm Infant
- (2016) Mara E. DiBartolomeo et al. CLINICAL THERAPEUTICS
- Centrifuge: rapid and sensitive classification of metagenomic sequences
- (2016) Daehwan Kim et al. GENOME RESEARCH
- Genome-based phylogeny and taxonomy of the ‘Enterobacteriales’: proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov.
- (2016) INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Strain-level microbial epidemiology and population genomics from shotgun metagenomics
- (2016) Matthias Scholz et al. NATURE METHODS
- CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database
- (2016) Baofeng Jia et al. NUCLEIC ACIDS RESEARCH
- Necrotizing enterocolitis and preterm infant gut bacteria
- (2016) Barbara B. Warner et al. Seminars in Fetal & Neonatal Medicine
- Metagenomic Sequencing with Strain-Level Resolution Implicates Uropathogenic E. coli in Necrotizing Enterocolitis and Mortality in Preterm Infants
- (2016) Doyle V. Ward et al. Cell Reports
- Roary: rapid large-scale prokaryote pan genome analysis
- (2015) Andrew J. Page et al. BIOINFORMATICS
- Klebsiella pneumoniaesurvives within macrophages by avoiding delivery to lysosomes
- (2015) Victoria Cano et al. CELLULAR MICROBIOLOGY
- CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
- (2015) Donovan H. Parks et al. GENOME RESEARCH
- VFDB 2016: hierarchical and refined dataset for big data analysis—10 years on
- (2015) Lihong Chen et al. NUCLEIC ACIDS RESEARCH
- Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance inKlebsiella pneumoniae, an urgent threat to public health
- (2015) Kathryn E. Holt et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Gut bacteria are rarely shared by co-hospitalized premature infants, regardless of necrotizing enterocolitis development
- (2015) Tali Raveh-Sadka et al. eLife
- Anvi’o: an advanced analysis and visualization platform for ‘omics data
- (2015) A. Murat Eren et al. PeerJ
- Late-Onset Bloodstream Infection and Perturbed Maturation of the Gastrointestinal Microbiota in Premature Infants
- (2015) Alexander G. Shaw et al. PLoS One
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- Dysbiosis Anticipating Necrotizing Enterocolitis in Very Premature Infants
- (2014) K. Sim et al. CLINICAL INFECTIOUS DISEASES
- Genotypes of Klebsiella oxytoca Isolates from Patients with Nosocomial Pneumonia Are Distinct from Those of Isolates from Patients with Antibiotic-Associated Hemorrhagic Colitis
- (2014) K. A. T. Herzog et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Early Empiric Antibiotic Use in Preterm Infants Is Associated with Lower Bacterial Diversity and Higher Relative Abundance of Enterobacter
- (2014) Corryn Greenwood et al. JOURNAL OF PEDIATRICS
- Fast and sensitive protein alignment using DIAMOND
- (2014) Benjamin Buchfink et al. NATURE METHODS
- Role of Novel Multidrug Efflux Pump Involved in Drug Resistance in Klebsiella pneumoniae
- (2014) Vijaya Bharathi Srinivasan et al. PLoS One
- KpnEF, a New Member of the Klebsiella pneumoniae Cell Envelope Stress Response Regulon, Is an SMR-Type Efflux Pump Involved in Broad-Spectrum Antimicrobial Resistance
- (2013) Vijaya Bharathi Srinivasan et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Distortions in Development of Intestinal Microbiota Associated with Late Onset Sepsis in Preterm Infants
- (2013) Volker Mai et al. PLoS One
- Intestinal Microbial Ecology and Environmental Factors Affecting Necrotizing Enterocolitis
- (2013) Roberto Murgas Torrazza et al. PLoS One
- The human microbiome as a reservoir of antimicrobial resistance
- (2013) John Penders et al. Frontiers in Microbiology
- Bacterial community structure and functional contributions to emergence of health or necrotizing enterocolitis in preterm infants
- (2013) Erika C Claud et al. Microbiome
- Klebsiella michiganensis sp. nov., A New Bacterium Isolated from a Tooth Brush Holder
- (2012) Ratul Saha et al. CURRENT MICROBIOLOGY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- Metagenomic microbial community profiling using unique clade-specific marker genes
- (2012) Nicola Segata et al. NATURE METHODS
- Genetic Mechanisms of Antimicrobial Resistance of Acinetobacter Baumannii
- (2011) John S Esterly et al. ANNALS OF PHARMACOTHERAPY
- Klebsiella pneumoniae Yersiniabactin Promotes Respiratory Tract Infection through Evasion of Lipocalin 2
- (2011) Michael A. Bachman et al. INFECTION AND IMMUNITY
- Neonatal infections in England: the NeonIN surveillance network
- (2010) S. Vergnano et al. Archives of Disease in Childhood-Fetal and Neonatal Edition
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- PCR characterization and typing of Klebsiella pneumoniae using capsular type-specific, variable number tandem repeat and virulence gene targets
- (2010) J. F. Turton et al. JOURNAL OF MEDICAL MICROBIOLOGY
- Evolution of MRSA During Hospital Transmission and Intercontinental Spread
- (2010) S. R. Harris et al. SCIENCE
- The Battle for Iron between Bacterial Pathogens and Their Vertebrate Hosts
- (2010) Eric P. Skaar PLoS Pathogens
- 16S rRNA gene-based analysis of fecal microbiota from preterm infants with and without necrotizing enterocolitis
- (2009) Yunwei Wang et al. ISME Journal
- CRP Regulator Modulates Multidrug Resistance of Escherichia coli by Repressing the mdtEF Multidrug Efflux Genes
- (2009) Kunihiko Nishino et al. JOURNAL OF ANTIBIOTICS
- Molecular identification of blaSHV, blaLEN and blaOKP β-lactamase genes in Klebsiella pneumoniae by bi-directional sequencing of universal SP6- and T7-sequence-tagged blaSHV-PCR amplicons
- (2009) Maria Tärnberg et al. MOLECULAR AND CELLULAR PROBES
- FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix
- (2009) M. N. Price et al. MOLECULAR BIOLOGY AND EVOLUTION
- Shifting the genomic gold standard for the prokaryotic species definition
- (2009) Michael Richter et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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