Cellular adhesiveness and cellulolytic capacity in Anaerolineae revealed by omics-based genome interpretation
出版年份 2016 全文链接
标题
Cellular adhesiveness and cellulolytic capacity in Anaerolineae revealed by omics-based genome interpretation
作者
关键词
Cellular adhesion, Aggregation, Cellulolytic capacity, Anaerolineae, Chloroflexi, Anaerolinales
出版物
Biotechnology for Biofuels
Volume 9, Issue 1, Pages -
出版商
Springer Nature
发表日期
2016-05-24
DOI
10.1186/s13068-016-0524-z
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注意：仅列出部分参考文献，下载原文获取全部文献信息。- The complete genome sequence for putative H2- and S-oxidizerCandidatusSulfuricurvum sp., assembledde novofrom an aquifer-derived metagenome
- (2014) Kim M. Handley et al. ENVIRONMENTAL MICROBIOLOGY
- Thermophilic microbial cellulose decomposition and methanogenesis pathways recharacterized by metatranscriptomic and metagenomic analysis
- (2014) Yu Xia et al. Scientific Reports
- Pelolinea submarina gen. nov., sp. nov., an anaerobic, filamentous bacterium of the phylum Chloroflexi isolated from subseafloor sediment
- (2013) Hiroyuki Imachi et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Genome sequencing of a single cell of the widely distributed marine subsurface Dehalococcoidia, phylum Chloroflexi
- (2013) Kenneth Wasmund et al. ISME Journal
- Isolation and Characterization of a Thermophilic, Obligately Anaerobic and Heterotrophic Marine Chloroflexi Bacterium from a Chloroflexi-dominated Microbial Community Associated with a Japanese Shallow Hydrothermal System, and Proposal for Thermomarinilinea lacunofontalis gen. nov., sp. nov.
- (2013) Takuro Nunoura et al. MICROBES AND ENVIRONMENTS
- Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
- (2013) Mads Albertsen et al. NATURE BIOTECHNOLOGY
- IMG 4 version of the integrated microbial genomes comparative analysis system
- (2013) Victor M. Markowitz et al. NUCLEIC ACIDS RESEARCH
- Mining of Novel Thermo-Stable Cellulolytic Genes from a Thermophilic Cellulose-Degrading Consortium by Metagenomics
- (2013) Yu Xia et al. PLoS One
- Industrial activated sludge exhibit unique bacterial community composition at high taxonomic ranks
- (2013) Federico M. Ibarbalz et al. WATER RESEARCH
- Small Genomes and Sparse Metabolisms of Sediment-Associated Bacteria from Four Candidate Phyla
- (2013) R. S. Kantor et al. mBio
- Community genomic analyses constrain the distribution of metabolic traits across the Chloroflexi phylum and indicate roles in sediment carbon cycling
- (2013) Laura A Hug et al. Microbiome
- Time series community genomics analysis reveals rapid shifts in bacterial species, strains, and phage during infant gut colonization
- (2012) I. Sharon et al. GENOME RESEARCH
- Ornatilinea apprima gen. nov., sp. nov., a cellulolytic representative of the class Anaerolineae
- (2012) O. A. Podosokorskaya et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- MetaVelvet: an extension of Velvet assembler to de novo metagenome assembly from short sequence reads
- (2012) Toshiaki Namiki et al. NUCLEIC ACIDS RESEARCH
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla
- (2012) K. C. Wrighton et al. SCIENCE
- Quantitative detection of previously characterized syntrophic bacteria in anaerobic wastewater treatment systems by sequence-specific rRNA cleavage method
- (2012) Takashi Narihiro et al. WATER RESEARCH
- Population dynamics of filamentous bacteria in Danish wastewater treatment plants with nutrient removal
- (2012) Artur Tomasz Mielczarek et al. WATER RESEARCH
- Meta-IDBA: a de Novo assembler for metagenomic data
- (2011) Y. Peng et al. BIOINFORMATICS
- UCHIME improves sensitivity and speed of chimera detection
- (2011) Robert C. Edgar et al. BIOINFORMATICS
- Quality control and preprocessing of metagenomic datasets
- (2011) R. Schmieder et al. BIOINFORMATICS
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Methanogenesis facilitated by electric syntrophy via (semi)conductive iron-oxide minerals
- (2011) Souichiro Kato et al. ENVIRONMENTAL MICROBIOLOGY
- Integrative analysis of environmental sequences using MEGAN4
- (2011) D. H. Huson et al. GENOME RESEARCH
- Genomic insights to SAR86, an abundant and uncultivated marine bacterial lineage
- (2011) Chris L Dupont et al. ISME Journal
- 454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants
- (2011) Tong Zhang et al. ISME Journal
- MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
- (2011) K. Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- Metagenomic Discovery of Biomass-Degrading Genes and Genomes from Cow Rumen
- (2011) M. Hess et al. SCIENCE
- Isolation and characterization of Thermanaerothrix daxensis gen. nov., sp. nov., a thermophilic anaerobic bacterium pertaining to the phylum “Chloroflexi”, isolated from a deep hot aquifer in the Aquitaine Basin
- (2011) Patrick Grégoire et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
- EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data
- (2011) Christopher S Miller et al. GENOME BIOLOGY
- Genomic Insights into Syntrophy: The Paradigm for Anaerobic Metabolic Cooperation
- (2010) Jessica R. Sieber et al. Annual Review of Microbiology
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- Adaptation to herbivory by the Tammar wallaby includes bacterial and glycoside hydrolase profiles different from other herbivores
- (2010) P. B. Pope et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
- (2010) Stéphane Guindon et al. SYSTEMATIC BIOLOGY
- Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs
- (2010) Alexander F. Auch et al. Standards in Genomic Sciences
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge
- (2009) Delphine Rivière et al. ISME Journal
- The roles of outer membrane cytochromes ofShewanellaandGeobacterin extracellular electron transfer
- (2009) Liang Shi et al. Environmental Microbiology Reports
- Community-wide analysis of microbial genome sequence signatures
- (2009) Gregory J Dick et al. GENOME BIOLOGY
- Type IV pili: e pluribus unum?
- (2008) Vladimir Pelicic MOLECULAR MICROBIOLOGY
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