Single-cell ATAC and RNA sequencing reveal pre-existing and persistent cells associated with prostate cancer relapse
出版年份 2021 全文链接
标题
Single-cell ATAC and RNA sequencing reveal pre-existing and persistent cells associated with prostate cancer relapse
作者
关键词
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出版物
Nature Communications
Volume 12, Issue 1, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2021-09-06
DOI
10.1038/s41467-021-25624-1
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Single-cell analysis reveals transcriptomic remodellings in distinct cell types that contribute to human prostate cancer progression
- (2021) Sujun Chen et al. NATURE CELL BIOLOGY
- Single-cell lineages reveal the rates, routes, and drivers of metastasis in cancer xenografts
- (2021) Jeffrey J. Quinn et al. SCIENCE
- Resistance to Antiandrogens in Prostate Cancer: Is It Inevitable, Intrinsic or Induced?
- (2021) Norman J. Maitland Cancers
- Derivation and Application of Molecular Signatures to Prostate Cancer: Opportunities and Challenges
- (2021) Dimitrios Doultsinos et al. Cancers
- Single-cell transcriptional diversity is a hallmark of developmental potential
- (2020) Gunsagar S. Gulati et al. SCIENCE
- Loss of CHD1 Promotes Heterogeneous Mechanisms of Resistance to AR-Targeted Therapy via Chromatin Dysregulation
- (2020) Zeda Zhang et al. CANCER CELL
- Transcriptional profiling identifies an androgen receptor activity-low, stemness program associated with enzalutamide resistance
- (2020) Joshi J. Alumkal et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Regenerative potential of prostate luminal cells revealed by single-cell analysis
- (2020) Wouter R. Karthaus et al. SCIENCE
- Generalizing RNA velocity to transient cell states through dynamical modeling
- (2020) Volker Bergen et al. NATURE BIOTECHNOLOGY
- HRT Atlas v1.0 database: redefining human and mouse housekeeping genes and candidate reference transcripts by mining massive RNA-seq datasets
- (2020) Bidossessi Wilfried Hounkpe et al. NUCLEIC ACIDS RESEARCH
- Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin
- (2020) Sai Ma et al. CELL
- Genome-Scale Imaging of the 3D Organization and Transcriptional Activity of Chromatin
- (2020) Jun-Han Su et al. CELL
- Changes in regeneration-responsive enhancers shape regenerative capacities in vertebrates
- (2020) Wei Wang et al. SCIENCE
- Prostate cancer evolution from multilineage primary to single lineage metastases with implications for liquid biopsy
- (2020) D. J. Woodcock et al. Nature Communications
- Condensed Chromatin Behaves like a Solid on the Mesoscale In Vitro and in Living Cells
- (2020) Hilmar Strickfaden et al. CELL
- Molecular Co-occupancy Identifies Transcription Factor Binding Cooperativity In Vivo
- (2020) Can Sönmezer et al. MOLECULAR CELL
- Genomic and phenotypic heterogeneity in prostate cancer
- (2020) Michael C. Haffner et al. Nature Reviews Urology
- GTRD: an integrated view of transcription regulation
- (2020) Semyon Kolmykov et al. NUCLEIC ACIDS RESEARCH
- Clinical Actionability of the Genomic Landscape of Metastatic Castration Resistant Prostate Cancer
- (2020) Wout Devlies et al. Cells
- Chromatin accessibility and the regulatory epigenome
- (2019) Sandy L. Klemm et al. NATURE REVIEWS GENETICS
- Genomic correlates of clinical outcome in advanced prostate cancer
- (2019) Wassim Abida et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comprehensive Integration of Single-Cell Data
- (2019) Tim Stuart et al. CELL
- Durable Response of Enzalutamide-resistant Prostate Cancer to Supraphysiological Testosterone Is Associated with a Multifaceted Growth Suppression and Impaired DNA Damage Response Transcriptomic Program in Patient-derived Xenografts
- (2019) Hung-Ming Lam et al. EUROPEAN UROLOGY
- Molecular profiling stratifies diverse phenotypes of treatment-refractory metastatic castration-resistant prostate cancer
- (2019) Mark P. Labrecque et al. JOURNAL OF CLINICAL INVESTIGATION
- The β2-Adrenergic Receptor Is a Molecular Switch for Neuroendocrine Transdifferentiation of Prostate Cancer Cells
- (2019) Peder R. Braadland et al. MOLECULAR CANCER RESEARCH
- Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion
- (2019) Ansuman T. Satpathy et al. NATURE BIOTECHNOLOGY
- Molecular determinants for enzalutamide-induced transcription in prostate cancer
- (2019) Fuwen Yuan et al. NUCLEIC ACIDS RESEARCH
- Fast, sensitive and accurate integration of single-cell data with Harmony
- (2019) Ilya Korsunsky et al. NATURE METHODS
- Drivers of AR indifferent anti-androgen resistance in prostate cancer cells
- (2019) Florian Handle et al. Scientific Reports
- CREB5 Promotes Resistance to Androgen-Receptor Antagonists and Androgen Deprivation in Prostate Cancer
- (2019) Justin H. Hwang et al. Cell Reports
- Molecular Biomarkers in Localized Prostate Cancer: ASCO Guideline
- (2019) Scott E. Eggener et al. JOURNAL OF CLINICAL ONCOLOGY
- hASH1 nuclear localization persists in neuroendocrine transdifferentiated prostate cancer cells, even upon reintroduction of androgen
- (2019) Jennifer A. Fraser et al. Scientific Reports
- Using combined evidence from replicates to evaluate ChIP-seq peaks
- (2018) Vahid Jalili et al. BIOINFORMATICS
- Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors
- (2018) Laleh Haghverdi et al. NATURE BIOTECHNOLOGY
- Integrating single-cell transcriptomic data across different conditions, technologies, and species
- (2018) Andrew Butler et al. NATURE BIOTECHNOLOGY
- Androgen receptor splice variants bind to constitutively open chromatin and promote abiraterone-resistant growth of prostate cancer
- (2018) Yundong He et al. NUCLEIC ACIDS RESEARCH
- Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity
- (2018) Emelie Berglund et al. Nature Communications
- MYC-driven epigenetic reprogramming favors the onset of tumorigenesis by inducing a stem cell-like state
- (2018) Vittoria Poli et al. Nature Communications
- Clustering trees: a visualisation for evaluating clusterings at multiple resolutions
- (2018) Luke Zappia et al. GigaScience
- Multifocal Primary Prostate Cancer Exhibits High Degree of Genomic Heterogeneity
- (2018) Marthe Løvf et al. EUROPEAN UROLOGY
- Molecular Evolution of Early-Onset Prostate Cancer Identifies Molecular Risk Markers and Clinical Trajectories
- (2018) Clarissa Gerhauser et al. CANCER CELL
- Genomic Hallmarks and Structural Variation in Metastatic Prostate Cancer
- (2018) David A. Quigley et al. CELL
- Androgen receptor inhibitor–induced “BRCAness” and PARP inhibition are synthetically lethal for castration-resistant prostate cancer
- (2017) Likun Li et al. Science Signaling
- Massively parallel digital transcriptional profiling of single cells
- (2017) Grace X. Y. Zheng et al. Nature Communications
- Integrative molecular network analysis identifies emergent enzalutamide resistance mechanisms in prostate cancer
- (2017) Carly J. King et al. Oncotarget
- Androgen Receptor Deregulation Drives Bromodomain-Mediated Chromatin Alterations in Prostate Cancer
- (2017) Alfonso Urbanucci et al. Cell Reports
- Androgen receptor inhibitor–induced “BRCAness” and PARP inhibition are synthetically lethal for castration-resistant prostate cancer
- (2017) Likun Li et al. Science Signaling
- c-Myc Antagonises the Transcriptional Activity of the Androgen Receptor in Prostate Cancer Affecting Key Gene Networks
- (2017) Stefan J. Barfeld et al. EBioMedicine
- ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization
- (2016) Guangchuang Yu et al. Molecular BioSystems
- Divergent clonal evolution of castration-resistant neuroendocrine prostate cancer
- (2016) Himisha Beltran et al. NATURE MEDICINE
- Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
- (2015) Evan Z. Macosko et al. CELL
- Characterization of 1577 Primary Prostate Cancers Reveals Novel Biological and Clinicopathologic Insights into Molecular Subtypes
- (2015) Scott A. Tomlins et al. EUROPEAN UROLOGY
- Atad2 is a generalist facilitator of chromatin dynamics in embryonic stem cells
- (2015) Yuichi Morozumi et al. Journal of Molecular Cell Biology
- The Molecular Signatures Database Hallmark Gene Set Collection
- (2015) Arthur Liberzon et al. Cell Systems
- HES6 drives a critical AR transcriptional programme to induce castration-resistant prostate cancer through activation of an E2F1-mediated cell cycle network
- (2014) Antonio Ramos-Montoya et al. EMBO Molecular Medicine
- Therapeutic targeting of BET bromodomain proteins in castration-resistant prostate cancer
- (2014) Irfan A. Asangani et al. NATURE
- featureCounts: an efficient general purpose program for assigning sequence reads to genomic features
- (2013) Y. Liao et al. BIOINFORMATICS
- Glucocorticoid Receptor Confers Resistance to Antiandrogens by Bypassing Androgen Receptor Blockade
- (2013) Vivek K. Arora et al. CELL
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- A new shrinkage estimator for dispersion improves differential expression detection in RNA-seq data
- (2012) H. Wu et al. BIOSTATISTICS
- The mutational landscape of lethal castration-resistant prostate cancer
- (2012) Catherine S. Grasso et al. NATURE
- Using formaldehyde-assisted isolation of regulatory elements (FAIRE) to isolate active regulatory DNA
- (2012) Jeremy M Simon et al. Nature Protocols
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- Integrative Genomic Profiling of Human Prostate Cancer
- (2010) Barry S. Taylor et al. CANCER CELL
- Model-based Analysis of ChIP-Seq (MACS)
- (2008) Yong Zhang et al. GENOME BIOLOGY
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