Genome-wide comparative analyses of GATA transcription factors among 19 Arabidopsis ecotype genomes: Intraspecific characteristics of GATA transcription factors
出版年份 2021 全文链接
标题
Genome-wide comparative analyses of GATA transcription factors among 19 Arabidopsis ecotype genomes: Intraspecific characteristics of GATA transcription factors
作者
关键词
Arabidopsis thaliana, Genomics, Alternative splicing, Phylogenetic analysis, Protein domains, Chloroplast genome, Gene regulation, Structural genomics
出版物
PLoS One
Volume 16, Issue 5, Pages e0252181
出版商
Public Library of Science (PLoS)
发表日期
2021-05-27
DOI
10.1371/journal.pone.0252181
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- The complete chloroplast genome of Campanula takesimana Nakai from Dokdo Island in Korea (Campanulaceae)
- (2021) Jongsun Park et al. Mitochondrial DNA Part B-Resources
- Genome-Wide Characterization, Evolution, and Expression Profile Analysis of GATA Transcription Factors in Brachypodium distachyon
- (2021) Weiye Peng et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- The complete chloroplast genome of Zoysia matrella (L.) Merr. isolated in Korea (Poaceae): investigation of intraspecific variations on chloroplast genomes
- (2021) Bumkyu Lee et al. Mitochondrial DNA Part B-Resources
- The Comparative Analyses of Six Complete Chloroplast Genomes of Morphologically Diverse Chenopodium album L. (Amaranthaceae) Collected in Korea
- (2021) Jongsun Park et al. International Journal of Genomics
- The complete chloroplast genome of Aruncus dioicus var. kamtschaticus (Rosaceae)
- (2021) Hwa-Jung Suh et al. Mitochondrial DNA Part B-Resources
- A complete chloroplast genome sequence of Gastrodia elata (Orchidaceae) represents high sequence variation in the species
- (2020) Jongsun Park et al. Mitochondrial DNA Part B-Resources
- The complete chloroplast genomes of two cold hardness coffee trees, Coffea arabica L. (Rubiaceae)
- (2020) Jongsun Park et al. Mitochondrial DNA Part B-Resources
- The complete chloroplast genome of Selaginella tamariscina (Beauv.) Spring (Selaginellaceae) isolated in Korea
- (2020) Jongsun Park et al. Mitochondrial DNA Part B-Resources
- The comparison of the complete chloroplast genome of Suaeda japonica Makino presenting different external morphology (Amaranthaceae)
- (2020) Yongsung Kim et al. Mitochondrial DNA Part B-Resources
- A second complete chloroplast genome sequence of Fagus multinervis Nakai (Fagaceae): intraspecific variations on chloroplast genome
- (2020) Jongsun Park et al. Mitochondrial DNA Part B-Resources
- The complete chloroplast genome of Agrimonia pilosa Ledeb. isolated in Korea (Rosaceae): investigation of intraspecific variations on its chloroplast genomes
- (2020) Kyeong-In Heo et al. Mitochondrial DNA Part B-Resources
- The GATA Gene Family in Chickpea: Structure Analysis and Transcriptional Responses to Abscisic Acid and Dehydration Treatments Revealed Potential Genes Involved in Drought Adaptation
- (2020) Liangjie Niu et al. JOURNAL OF PLANT GROWTH REGULATION
- The Complete Chloroplast Genome of Arabidopsis thaliana Isolated in Korea (Brassicaceae): An Investigation of Intraspecific Variations of the Chloroplast Genome of Korean A. thaliana
- (2020) Jongsun Park et al. International Journal of Genomics
- Two complete chloroplast genome sequences and intra-species diversity for Rehmannia glutinosa (Orobanchaceae)
- (2019) Jae-Hyeon Jeon et al. Mitochondrial DNA Part B-Resources
- The complete chloroplast genome sequence of a morphotype of Goodyera schlechtendaliana (Orchidaceae) with the column appendages
- (2019) Sang-Hun Oh et al. Mitochondrial DNA Part B-Resources
- The complete chloroplast genome of Korean mock strawberry, Duchesnea chrysantha (Zoll. & Moritzi) Miq. (Rosoideae)
- (2019) Jongsun Park et al. Mitochondrial DNA Part B-Resources
- The second complete chloroplast genome sequence of Nymphaea alba L. (Nymphaeaceae) to investigate inner-species variations
- (2019) Jongsun Park et al. Mitochondrial DNA Part B-Resources
- The complete chloroplast genome of aniseed tree, Illicium anisatum L. (Schisandraceae)
- (2019) Jongsun Park et al. Mitochondrial DNA Part B-Resources
- The complete chloroplast genome of common camellia tree, Camellia japonica L. (Theaceae), adapted to cold environment in Korea
- (2019) Jongsun Park et al. Mitochondrial DNA Part B-Resources
- The complete chloroplast genome of cold hardiness individual of Coffea arabica L. (Rubiaceae)
- (2019) Jongsun Park et al. Mitochondrial DNA Part B-Resources
- The complete chloroplast genome of ornamental coffee tree, Coffea arabica L. (Rubiaceae)
- (2019) Jongsun Park et al. Mitochondrial DNA Part B-Resources
- The complete chloroplast genome of Potentilla stolonifera var. quelpaertensis Nakai
- (2019) Kyeong-In Heo et al. Mitochondrial DNA Part B-Resources
- The complete chloroplast genome of common camellia tree in Jeju island, Korea, Camellia japonica L. (Theaceae): intraspecies variations on common camellia chloroplast genomes
- (2019) Jongsun Park et al. Mitochondrial DNA Part B-Resources
- The second complete chloroplast genome sequence of Pseudostellaria palibiniana (Takeda) Ohwi (Caryophyllaceae): intraspecies variations based on geographical distribution
- (2019) Yongsung Kim et al. Mitochondrial DNA Part B-Resources
- Analysis of an improved Cyanophora paradoxa genome assembly
- (2019) Dana C Price et al. DNA RESEARCH
- The complete chloroplast genome of tulip tree, Liriodendron tulifipera L. (Magnoliaceae): investigation of intra-species chloroplast variations
- (2019) Jongsun Park et al. Mitochondrial DNA Part B-Resources
- The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Blue Mountain’ (Rubiaceae)
- (2019) Jongsun Park et al. Mitochondrial DNA Part B-Resources
- The complete chloroplast genome of coffee tree, Coffea arabica L. ‘Typica’ (Rubiaceae)
- (2019) Juhyeon Min et al. Mitochondrial DNA Part B-Resources
- The complete chloroplast genome of Korean Pyrus ussuriensis Maxim. (Rosaceae): providing genetic background of two types of P. ussuriensis
- (2019) Myong-Suk Cho et al. Mitochondrial DNA Part B-Resources
- The complete chloroplast genome of candidate new species from Rosa rugosa in Korea (Rosaceae)
- (2019) Yongsung Kim et al. Mitochondrial DNA Part B-Resources
- The complete chloroplast genome sequence of Goodyera schlechtendaliana in Korea (Orchidaceae)
- (2019) Sang-Hun Oh et al. Mitochondrial DNA Part B-Resources
- The complete chloroplast genome of Aconitum coreanum (H. Lév.) Rapaics (Ranunculaceae)
- (2019) Yongsung Kim et al. Mitochondrial DNA Part B-Resources
- A GATA transcription factor PdGNC plays an important role in photosynthesis and growth in Populus
- (2019) Yi An et al. JOURNAL OF EXPERIMENTAL BOTANY
- The C-Fern (Ceratopteris richardii) genome: insights into plant genome evolution with the first partial homosporous fern genome assembly
- (2019) D. Blaine Marchant et al. Scientific Reports
- The second complete chloroplast genome sequence of the Viburnum erosum (Adoxaceae) showed a low level of intra-species variations
- (2019) Yun Gyeong Choi et al. Mitochondrial DNA Part B-Resources
- Whole-Genome Comparison Reveals Heterogeneous Divergence and Mutation Hotspots in Chloroplast Genome of Eucommia ulmoides Oliver
- (2018) Wencai Wang et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms
- (2018) Sudhir Kumar et al. MOLECULAR BIOLOGY AND EVOLUTION
- Nanopore sequencing and assembly of a human genome with ultra-long reads
- (2018) Miten Jain et al. NATURE BIOTECHNOLOGY
- LLM-Domain B-GATA Transcription Factors Play Multifaceted Roles in Controlling Greening in Arabidopsis
- (2018) Emmanouil Bastakis et al. PLANT CELL
- Coordination of Chloroplast Development through the Action of the GNC and GLK Transcription Factor Families
- (2018) Yan Zubo et al. PLANT PHYSIOLOGY
- Characterization of the GATA gene family in Vitis vinifera: genome-wide analysis, expression profiles, and involvement in light and phytohormone response
- (2018) Zhan Zhang et al. GENOME
- Genomics of the origin and evolution of Citrus
- (2018) Guohong Albert Wu et al. NATURE
- Functional and evolutionary genomic inferences in Populus through genome and population sequencing of American and European aspen
- (2018) Yao-Cheng Lin et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Genome-wide identification, evolution, and expression analysis of GATA transcription factors in apple ( Malus × domestica Borkh.)
- (2017) Hongfei Chen et al. GENE
- Long-read genome sequencing identifies causal structural variation in a Mendelian disease
- (2017) Jason D Merker et al. GENETICS IN MEDICINE
- ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter
- (2017) Shaun D. Jackman et al. GENOME RESEARCH
- Abiotic Stresses Cause Differential Regulation of Alternative Splice Forms of GATA Transcription Factor in Rice
- (2017) Priyanka Gupta et al. Frontiers in Plant Science
- 1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana
- (2016) Carlos Alonso-Blanco et al. CELL
- De novo assembly and phasing of a Korean human genome
- (2016) Jeong-Sun Seo et al. NATURE
- Landscape of somatic mutations in 560 breast cancer whole-genome sequences
- (2016) Serena Nik-Zainal et al. NATURE
- Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice
- (2016) Kenji Yano et al. NATURE GENETICS
- Coming of age: ten years of next-generation sequencing technologies
- (2016) Sara Goodwin et al. NATURE REVIEWS GENETICS
- Genome-wide association study reveals putative regulators of bioenergy traits in Populus deltoides
- (2016) Annette M. Fahrenkrog et al. NEW PHYTOLOGIST
- LLM-Domain B-GATA Transcription Factors Promote Stomatal Development Downstream of Light Signaling Pathways inArabidopsis thalianaHypocotyls
- (2016) Carina Klermund et al. PLANT CELL
- An Indexed, Mapped Mutant Library Enables Reverse Genetics Studies of Biological Processes in Chlamydomonas reinhardtii
- (2016) Xiaobo Li et al. PLANT CELL
- LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development inArabidopsis thaliana
- (2016) Quirin L. Ranftl et al. PLANT PHYSIOLOGY
- Identification of candidate genes and natural allelic variants for QTLs governing plant height in chickpea
- (2016) Alice Kujur et al. Scientific Reports
- MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph
- (2015) Dinghua Li et al. BIOINFORMATICS
- OsGRAS23, a rice GRAS transcription factor gene, is involved in drought stress response through regulating expression of stress-responsive genes
- (2015) Kai Xu et al. BMC PLANT BIOLOGY
- Genome-Wide Survey of the Soybean GATA Transcription Factor Gene Family and Expression Analysis under Low Nitrogen Stress
- (2015) Chanjuan Zhang et al. PLoS One
- Third generation sequencing: technology and its potential impact on evolutionary biodiversity research
- (2015) Christoph Bleidorn SYSTEMATICS AND BIODIVERSITY
- Rare variant discovery by deep whole-genome sequencing of 1,070 Japanese individuals
- (2015) Masao Nagasaki et al. Nature Communications
- PacBio Sequencing and Its Applications
- (2015) Anthony Rhoads et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- Quantitative Trait Locus Mapping and Candidate Gene Analysis for Plant Architecture Traits Using Whole Genome Re-Sequencing in Rice
- (2014) Jung-Hyun Lim et al. MOLECULES AND CELLS
- Population genomics of Populus trichocarpa identifies signatures of selection and adaptive trait associations
- (2014) Luke M Evans et al. NATURE GENETICS
- Genome re-sequencing suggested a weedy rice origin from domesticated indica-japonica hybridization: a case study from southern China
- (2014) Jie Qiu et al. PLANTA
- Australian Wild Rice Reveals Pre-Domestication Origin of Polymorphism Deserts in Rice Genome
- (2014) Gopala Krishnan S. et al. PLoS One
- Ten years of next-generation sequencing technology
- (2014) Erwin L. van Dijk et al. TRENDS IN GENETICS
- Combining high-throughput phenotyping and genome-wide association studies to reveal natural genetic variation in rice
- (2014) Wanneng Yang et al. Nature Communications
- The 3,000 rice genomes project: new opportunities and challenges for future rice research
- (2014) Jia-Yang Li et al. GigaScience
- The 3,000 rice genomes project
- (2014) GigaScience
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Patterns of population epigenomic diversity
- (2013) Robert J. Schmitz et al. NATURE
- Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden
- (2013) Quan Long et al. NATURE GENETICS
- Transcription Repressor HANABA TARANU Controls Flower Development by Integrating the Actions of Multiple Hormones, Floral Organ Specification Genes, and GATA3 Family Genes inArabidopsis
- (2013) Xiaolan Zhang et al. PLANT CELL
- Cross-Repressive Interactions between SOC1 and the GATAs GNC and GNL/CGA1 in the Control of Greening, Cold Tolerance, and Flowering Time in Arabidopsis
- (2013) R. Richter et al. PLANT PHYSIOLOGY
- Convergence of auxin and gibberellin signaling on the regulation of the GATA transcription factors GNC and GNL in Arabidopsis thaliana
- (2013) R. Richter et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The Amborella Genome and the Evolution of Flowering Plants
- (2013) et al. SCIENCE
- Stable establishment of cotyledon identity during embryogenesis in Arabidopsis by ANGUSTIFOLIA3 and HANABA TARANU
- (2012) M. Kanei et al. DEVELOPMENT
- Function of alternative splicing
- (2012) Olga Kelemen et al. GENE
- A map of rice genome variation reveals the origin of cultivated rice
- (2012) Xuehui Huang et al. NATURE
- Associative transcriptomics of traits in the polyploid crop species Brassica napus
- (2012) Andrea L Harper et al. NATURE BIOTECHNOLOGY
- The 1000 Genomes Project: data management and community access
- (2012) Laura Clarke et al. NATURE METHODS
- Genome-wide DNA polymorphisms in eliteindicarice inbreds discovered by whole-genome sequencing
- (2012) Gopala K. Subbaiyan et al. PLANT BIOTECHNOLOGY JOURNAL
- OsDof25 expression alters carbon and nitrogen metabolism in Arabidopsis under high N-supply
- (2012) Leandro Azevedo Santos et al. Plant Biotechnology Reports
- Functional Characterization of the GATA Transcription Factors GNC and CGA1 Reveals Their Key Role in Chloroplast Development, Growth, and Division in Arabidopsis
- (2012) Y.-H. Chiang et al. PLANT PHYSIOLOGY
- Arabidopsis circadian clock protein, TOC1, is a DNA-binding transcription factor
- (2012) J. M. Gendron et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Alternative splicing in plants – coming of age
- (2012) Naeem H. Syed et al. TRENDS IN PLANT SCIENCE
- SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
- (2012) Ruibang Luo et al. GigaScience
- NAC transcription factors in plant abiotic stress responses
- (2011) Kazuo Nakashima et al. Biochimica et Biophysica Acta-Gene Regulatory Mechanisms
- Parallelized short read assembly of large genomes using de Bruijn graphs
- (2011) Yongchao Liu et al. BMC BIOINFORMATICS
- Personalized medicine for lung cancer: new challenges for pathology
- (2011) Keith M Kerr HISTOPATHOLOGY
- Multiple reference genomes and transcriptomes for Arabidopsis thaliana
- (2011) Xiangchao Gan et al. NATURE
- Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes
- (2011) Xun Xu et al. NATURE BIOTECHNOLOGY
- Whole-genome sequencing of multiple Arabidopsis thaliana populations
- (2011) Jun Cao et al. NATURE GENETICS
- Transpositional landscape of the rice genome revealed by paired-end mapping of high-throughput re-sequencing data
- (2011) François Sabot et al. PLANT JOURNAL
- Cold acclimation induces changes in Arabidopsis tonoplast protein abundance and activity and alters phosphorylation of tonoplast monosaccharide transporters
- (2011) Waltraud X. Schulze et al. PLANT JOURNAL
- GNC and CGA1 Modulate Chlorophyll Biosynthesis and Glutamate Synthase (GLU1/Fd-GOGAT) Expression in Arabidopsis
- (2011) Darryl Hudson et al. PLoS One
- Distinct regulatory programs establish widespread sex-specific alternative splicing in Drosophila melanogaster
- (2011) B. Hartmann et al. RNA
- Personalized cancer medicine and the future of pathology
- (2011) H. Moch et al. VIRCHOWS ARCHIV
- Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa
- (2011) Keyan Zhao et al. Nature Communications
- Full genome re-sequencing reveals a novel circadian clock mutation in Arabidopsis
- (2011) Kevin Ashelford et al. GENOME BIOLOGY
- Developing high throughput genotyped chromosome segment substitution lines based on population whole-genome re-sequencing in rice (Oryza sativa L.)
- (2010) Jianjun Xu et al. BMC GENOMICS
- The GATA Factor HANABA TARANU Is Required to Position the Proembryo Boundary in the Early Arabidopsis Embryo
- (2010) Tal Nawy et al. DEVELOPMENTAL CELL
- The GATA-type transcription factors GNC and GNL/CGA1 repress gibberellin signaling downstream from DELLA proteins and PHYTOCHROME-INTERACTING FACTORS
- (2010) R. Richter et al. GENES & DEVELOPMENT
- Genome-wide association studies of 14 agronomic traits in rice landraces
- (2010) Xuehui Huang et al. NATURE GENETICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- The first Korean genome sequence and analysis: Full genome sequencing for a socio-ethnic group
- (2009) S.-M. Ahn et al. GENOME RESEARCH
- High-throughput genotyping by whole-genome resequencing
- (2009) X. Huang et al. GENOME RESEARCH
- SNP detection for massively parallel whole-genome resequencing
- (2009) R. Li et al. GENOME RESEARCH
- De novo assembly of human genomes with massively parallel short read sequencing
- (2009) R. Li et al. GENOME RESEARCH
- A highly annotated whole-genome sequence of a Korean individual
- (2009) Jong-Il Kim et al. NATURE
- A comprehensive catalogue of somatic mutations from a human cancer genome
- (2009) Erin D. Pleasance et al. NATURE
- The genome of the cucumber, Cucumis sativus L.
- (2009) Sanwen Huang et al. NATURE GENETICS
- Sequencing technologies — the next generation
- (2009) Michael L. Metzker NATURE REVIEWS GENETICS
- The ZIM domain mediates homo- and heteromeric interactions between Arabidopsis JAZ proteins
- (2009) Andrea Chini et al. PLANT JOURNAL
- Drought tolerance in Arabidopsis is controlled by theOCP3disease resistance regulator
- (2009) Vicente Ramírez et al. PLANT JOURNAL
- Sequencing of natural strains of Arabidopsis thaliana with short reads
- (2008) S. Ossowski et al. GENOME RESEARCH
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- A critical role of two positively charged amino acids in the Jas motif of Arabidopsis JAZ proteins in mediating coronatine- and jasmonoyl isoleucine-dependent interactions with the COI1 F-box protein
- (2008) Maeli Melotto et al. PLANT JOURNAL
- Two GATA Transcription Factors Are Downstream Effectors of Floral Homeotic Gene Action in Arabidopsis
- (2008) C. D. Mara et al. PLANT PHYSIOLOGY
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started