Genome-wide detection of enhancer-hijacking events from chromatin interaction data in rearranged genomes
出版年份 2021 全文链接
标题
Genome-wide detection of enhancer-hijacking events from chromatin interaction data in rearranged genomes
作者
关键词
-
出版物
NATURE METHODS
Volume 18, Issue 6, Pages 661-668
出版商
Springer Science and Business Media LLC
发表日期
2021-06-07
DOI
10.1038/s41592-021-01164-w
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Identifying statistically significant chromatin contacts from Hi-C data with FitHiC2
- (2020) Arya Kaul et al. Nature Protocols
- 13q12.2 deletions in acute lymphoblastic leukemia lead to upregulation of FLT3 through enhancer hijacking
- (2020) Minjun Yang et al. BLOOD
- A supervised learning framework for chromatin loop detection in genome-wide contact maps
- (2020) Tarik J. Salameh et al. Nature Communications
- Diverse noncoding mutations contribute to deregulation of cis-regulatory landscape in pediatric cancers
- (2020) Bing He et al. Science Advances
- Enhancer hijacking activates oncogenic transcription factor NR4A3 in acinic cell carcinomas of the salivary glands
- (2019) Florian Haller et al. Nature Communications
- Distinct structural classes of activating FOXA1 alterations in advanced prostate cancer
- (2019) Abhijit Parolia et al. NATURE
- Functional dissection of the Sox9–Kcnj2 locus identifies nonessential and instructive roles of TAD architecture
- (2019) Alexandra Despang et al. NATURE GENETICS
- PVT1 Signaling Is a Mediator of Cancer Progression
- (2019) Camille Derderian et al. Frontiers in Oncology
- Integrated paired-end enhancer profiling and whole-genome sequencing reveals recurrent CCNE1 and IGF2 enhancer hijacking in primary gastric adenocarcinoma
- (2019) Wen Fong Ooi et al. GUT
- Therapeutic Targeting of CDK12/CDK13 in Triple-Negative Breast Cancer
- (2019) Victor Quereda et al. CANCER CELL
- An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics
- (2018) Jianfang Liu et al. CELL
- Structural variation in the 3D genome
- (2018) Malte Spielmann et al. NATURE REVIEWS GENETICS
- OneD: increasing reproducibility of Hi-C samples with abnormal karyotypes
- (2018) Enrique Vidal et al. NUCLEIC ACIDS RESEARCH
- Effective normalization for copy number variation in Hi-C data
- (2018) Nicolas Servant et al. BMC BIOINFORMATICS
- Integrative detection and analysis of structural variation in cancer genomes
- (2018) Jesse R. Dixon et al. NATURE GENETICS
- Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis
- (2018) Bjørt K. Kragesteen et al. NATURE GENETICS
- CCND2 and CCND3 hijack immunoglobulin light chain enhancers in cyclin D1-negative mantle cell lymphoma
- (2018) David Martín-Garcia et al. BLOOD
- HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient
- (2017) Tao Yang et al. GENOME RESEARCH
- The whole-genome landscape of medulloblastoma subtypes
- (2017) Paul A. Northcott et al. NATURE
- HiTAD: detecting the structural and functional hierarchies of topologically associating domains from chromatin interactions
- (2017) Xiao-Tao Wang et al. NUCLEIC ACIDS RESEARCH
- MYC Drives a Subset of High-Risk Pediatric Neuroblastomas and Is Activated through Mechanisms Including Enhancer Hijacking and Focal Enhancer Amplification
- (2017) Mark W. Zimmerman et al. Cancer Discovery
- A computational strategy to adjust for copy number in tumor Hi-C data
- (2016) Hua-Jun Wu et al. BIOINFORMATICS
- Formation of new chromatin domains determines pathogenicity of genomic duplications
- (2016) Martin Franke et al. NATURE
- Pan-cancer analysis of somatic copy-number alterations implicates IRS4 and IGF2 in enhancer hijacking
- (2016) Joachim Weischenfeldt et al. NATURE GENETICS
- An oncogenic MYB feedback loop drives alternate cell fates in adenoid cystic carcinoma
- (2016) Yotam Drier et al. NATURE GENETICS
- deepTools2: a next generation web server for deep-sequencing data analysis
- (2016) Fidel Ramírez et al. NUCLEIC ACIDS RESEARCH
- Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
- (2016) Maxim V. Kuleshov et al. NUCLEIC ACIDS RESEARCH
- PI3K/AKT Signaling Regulates H3K4 Methylation in Breast Cancer
- (2016) Jennifer M. Spangle et al. Cell Reports
- Formation of Chromosomal Domains by Loop Extrusion
- (2016) Geoffrey Fudenberg et al. Cell Reports
- Condensin-driven remodelling of X chromosome topology during dosage compensation
- (2015) Emily Crane et al. NATURE
- Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes
- (2015) Adrian L. Sanborn et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Detection of Enhancer-Associated Rearrangements Reveals Mechanisms of Oncogene Dysregulation in B-cell Lymphoma
- (2015) R. J. H. Ryan et al. Cancer Discovery
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- A Single Oncogenic Enhancer Rearrangement Causes Concomitant EVI1 and GATA2 Deregulation in Leukemia
- (2014) Stefan Gröschel et al. CELL
- Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts
- (2014) F. Ay et al. GENOME RESEARCH
- Enhancer hijacking activates GFI1 family oncogenes in medulloblastoma
- (2014) Paul A. Northcott et al. NATURE
- ETV1 directs androgen metabolism and confers aggressive prostate cancer in targeted mice and patients
- (2013) E. Baena et al. GENES & DEVELOPMENT
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Iterative correction of Hi-C data reveals hallmarks of chromosome organization
- (2012) Maxim Imakaev et al. NATURE METHODS
- Control-FREEC: a tool for assessing copy number and allelic content using next-generation sequencing data
- (2011) Valentina Boeva et al. BIOINFORMATICS
- Overexpression of Full-Length ETV1 Transcripts in Clinical Prostate Cancer Due to Gene Translocation
- (2011) Delila Gasi et al. PLoS One
- The NIH Roadmap Epigenomics Mapping Consortium
- (2010) Bradley E Bernstein et al. NATURE BIOTECHNOLOGY
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started