标题
A computational strategy to adjust for copy number in tumor Hi-C data
作者
关键词
-
出版物
BIOINFORMATICS
Volume 32, Issue 24, Pages 3695-3701
出版商
Oxford University Press (OUP)
发表日期
2016-08-17
DOI
10.1093/bioinformatics/btw540
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- Chromatin architecture reorganization during stem cell differentiation
- (2015) Jesse R. Dixon et al. NATURE
- Hi-Corrector: a fast, scalable and memory-efficient package for normalizing large-scale Hi-C data
- (2014) Wenyuan Li et al. BIOINFORMATICS
- A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping
- (2014) Suhas S.P. Rao et al. CELL
- Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts
- (2014) F. Ay et al. GENOME RESEARCH
- Combining a wavelet change point and the Bayes factor for analysing chromosomal interaction data
- (2014) Yoli Shavit et al. Molecular BioSystems
- Topologically associating domains are stable units of replication-timing regulation
- (2014) Benjamin D. Pope et al. NATURE
- Single-cell Hi-C reveals cell-to-cell variability in chromosome structure
- (2013) Takashi Nagano et al. NATURE
- A high-resolution map of the three-dimensional chromatin interactome in human cells
- (2013) Fulai Jin et al. NATURE
- High-Resolution Mapping of the Spatial Organization of a Bacterial Chromosome
- (2013) T. B. K. Le et al. SCIENCE
- Organization of the Mitotic Chromosome
- (2013) N. Naumova et al. SCIENCE
- DNA replication timing and higher-order nuclear organization determine single-nucleotide substitution patterns in cancer genomes
- (2013) Lin Liu et al. Nature Communications
- HiTC: exploration of high-throughput ‘C’ experiments
- (2012) Nicolas Servant et al. BIOINFORMATICS
- HiCNorm: removing biases in Hi-C data via Poisson regression
- (2012) Ming Hu et al. BIOINFORMATICS
- A fast algorithm for matrix balancing
- (2012) P. A. Knight et al. IMA JOURNAL OF NUMERICAL ANALYSIS
- The Cancer Cell Line Encyclopedia enables predictive modelling of anticancer drug sensitivity
- (2012) Jordi Barretina et al. NATURE
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Iterative correction of Hi-C data reveals hallmarks of chromosome organization
- (2012) Maxim Imakaev et al. NATURE METHODS
- Fast Computation and Applications of Genome Mappability
- (2012) Thomas Derrien et al. PLoS One
- Oncogene-mediated alterations in chromatin conformation
- (2012) D. S. Rickman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Hallmarks of Cancer: The Next Generation
- (2011) Douglas Hanahan et al. CELL
- DNA replication timing and long-range DNA interactions predict mutational landscapes of cancer genomes
- (2011) Subhajyoti De et al. NATURE BIOTECHNOLOGY
- High order chromatin architecture shapes the landscape of chromosomal alterations in cancer
- (2011) Geoff Fudenberg et al. NATURE BIOTECHNOLOGY
- Genome architectures revealed by tethered chromosome conformation capture and population-based modeling
- (2011) Reza Kalhor et al. NATURE BIOTECHNOLOGY
- Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture
- (2011) Eitan Yaffe et al. NATURE GENETICS
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started