High-quality genome assembly and resequencing of modern cotton cultivars provide resources for crop improvement
出版年份 2021 全文链接
标题
High-quality genome assembly and resequencing of modern cotton cultivars provide resources for crop improvement
作者
关键词
-
出版物
NATURE GENETICS
Volume 53, Issue 9, Pages 1385-1391
出版商
Springer Science and Business Media LLC
发表日期
2021-08-10
DOI
10.1038/s41588-021-00910-2
参考文献
相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。- The genomic basis of geographic differentiation and fiber improvement in cultivated cotton
- (2021) Shoupu He et al. NATURE GENETICS
- The Gossypium longicalyx Genome as a Resource for Cotton Breeding and Evolution
- (2020) Corrinne E. Grover et al. G3-Genes Genomes Genetics
- Genome sequence of Gossypium herbaceum and genome updates of Gossypium arboreum and Gossypium hirsutum provide insights into cotton A-genome evolution
- (2020) Gai Huang et al. NATURE GENETICS
- Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement
- (2020) Z. Jeffrey Chen et al. NATURE GENETICS
- Characterizing the Major Structural Variant Alleles of the Human Genome
- (2019) Peter A. Audano et al. CELL
- Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton
- (2019) Yan Hu et al. NATURE GENETICS
- Extensive intraspecific gene order and gene structural variations in upland cotton cultivars
- (2019) Zhaoen Yang et al. Nature Communications
- Identification of candidate genes for key fibre‐related QTL s and derivation of favourable alleles in Gossypium hirsutum recombinant inbred lines with G. barbadense introgressions
- (2019) Furong Wang et al. PLANT BIOTECHNOLOGY JOURNAL
- GhbHLH18 negatively regulates fiber strength and length by enhancing lignin biosynthesis in cotton fibers
- (2019) Zhengyin Gao et al. PLANT SCIENCE
- Multi-strategic RNA-seq analysis reveals a high-resolution transcriptional landscape in cotton
- (2019) Kun Wang et al. Nature Communications
- Resequencing a core collection of upland cotton identifies genomic variation and loci influencing fiber quality and yield
- (2018) Zhiying Ma et al. NATURE GENETICS
- Resequencing of 243 diploid cotton accessions based on an updated A genome identifies the genetic basis of key agronomic traits
- (2018) Xiongming Du et al. NATURE GENETICS
- High-resolution comparative analysis of great ape genomes
- (2018) Zev N. Kronenberg et al. SCIENCE
- The cotton laccase gene GhLAC15 enhanced Verticillium wilt resistance via increasing defense-induced lignification and lignin components in the cell wall of plants
- (2018) Yan Zhang et al. MOLECULAR PLANT PATHOLOGY
- A genome-wide association study uncovers novel genomic regions and candidate genes of yield-related traits in upland cotton
- (2018) Zhengwen Sun et al. THEORETICAL AND APPLIED GENETICS
- Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense
- (2018) Maojun Wang et al. NATURE GENETICS
- Histochemical Analyses Reveal That Stronger Intrinsic Defenses in Gossypium barbadense Than in G. hirsutum Are Associated With Resistance to Verticillium dahliae
- (2017) Yan Zhang et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Genomic analyses in cotton identify signatures of selection and loci associated with fiber quality and yield traits
- (2017) Lei Fang et al. NATURE GENETICS
- Genome-wide association study discovered genetic variation and candidate genes of fibre quality traits in Gossypium hirsutum L.
- (2017) Zhengwen Sun et al. PLANT BIOTECHNOLOGY JOURNAL
- Expansion of the Gene Ontology knowledgebase and resources
- (2016) NUCLEIC ACIDS RESEARCH
- Targeted transfer of trait for Verticillium wilt resistance fromGossypium barbadenseintoG. hirsutumusing SSR markers
- (2016) Zhang Yan et al. PLANT BREEDING
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- Rapid evolutionary divergence of Gossypium barbadense and G. hirsutum mitochondrial genomes
- (2015) Mingyong Tang et al. BMC GENOMICS
- Genome sequence of cultivated Upland cotton (Gossypium hirsutum TM-1) provides insights into genome evolution
- (2015) Fuguang Li et al. NATURE BIOTECHNOLOGY
- Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement
- (2015) Tianzhen Zhang et al. NATURE BIOTECHNOLOGY
- Assembly and diploid architecture of an individual human genome via single-molecule technologies
- (2015) Matthew Pendleton et al. NATURE METHODS
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Gossypium barbadense genome sequence provides insight into the evolution of extra-long staple fiber and specialized metabolites
- (2015) Xia Liu et al. Scientific Reports
- Stable transformation and expression of GhEXPA8 fiber expansin gene to improve fiber length and micronaire value in cotton
- (2015) Kamran S. Bajwa et al. Frontiers in Plant Science
- Sequence-based ultra-dense genetic and physical maps reveal structural variations of allopolyploid cotton genomes
- (2015) Sen Wang et al. GENOME BIOLOGY
- Mapping QTL for cotton fiber quality traits using simple sequence repeat markers, conserved intron-scanning primers, and transcript-derived fragments
- (2014) Xinlei Yang et al. EUPHYTICA
- In vitro, long-range sequence information for de novo genome assembly via transposase contiguity
- (2014) Andrew Adey et al. GENOME RESEARCH
- Genome sequence of the cultivated cotton Gossypium arboreum
- (2014) Fuguang Li et al. NATURE GENETICS
- Tobacco rattle virus–based virus-induced gene silencing in Nicotiana benthamiana
- (2014) Muthappa Senthil-Kumar et al. Nature Protocols
- Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement
- (2014) Bruce J. Walker et al. PLoS One
- Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions
- (2013) Joshua N Burton et al. NATURE BIOTECHNOLOGY
- Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data
- (2013) Chen-Shan Chin et al. NATURE METHODS
- Data, information, knowledge and principle: back to metabolism in KEGG
- (2013) Minoru Kanehisa et al. NUCLEIC ACIDS RESEARCH
- TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
- (2013) Daehwan Kim et al. GENOME BIOLOGY
- Hi–C: A comprehensive technique to capture the conformation of genomes
- (2012) Jon-Matthew Belton et al. METHODS
- The draft genome of a diploid cotton Gossypium raimondii
- (2012) Kunbo Wang et al. NATURE GENETICS
- Genome-wide efficient mixed-model analysis for association studies
- (2012) Xiang Zhou et al. NATURE GENETICS
- Iterative correction of Hi-C data reveals hallmarks of chromosome organization
- (2012) Maxim Imakaev et al. NATURE METHODS
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
- (2012) Cole Trapnell et al. Nature Protocols
- MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
- (2012) Y. Wang et al. NUCLEIC ACIDS RESEARCH
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- Mapping copy number variation by population-scale genome sequencing
- (2011) Ryan E. Mills et al. NATURE
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- A Novel Isoform of Sucrose Synthase Is Targeted to the Cell Wall during Secondary Cell Wall Synthesis in Cotton Fiber
- (2011) Elizabeth Brill et al. PLANT PHYSIOLOGY
- Enhanced structural variant and breakpoint detection using SVMerge by integration of multiple detection methods and local assembly
- (2011) Kim Wong et al. GENOME BIOLOGY
- Identification and expression profile of GbAGL2, a C-class gene from G ossypium barbadense
- (2010) Xiang Liu et al. JOURNAL OF BIOSCIENCES
- Norcoclaurine Synthase Is a Member of the Pathogenesis-Related 10/Bet v1 Protein Family
- (2010) Eun-Jeong Lee et al. PLANT CELL
- Rice Snl6, a Cinnamoyl-CoA Reductase-Like Gene Family Member, Is Required for NH1-Mediated Immunity to Xanthomonas oryzae pv. oryzae
- (2010) Rebecca S. Bart et al. PLoS Genetics
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- BreakDancer: an algorithm for high-resolution mapping of genomic structural variation
- (2009) Ken Chen et al. NATURE METHODS
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- A Retrotransposon-Mediated Gene Duplication Underlies Morphological Variation of Tomato Fruit
- (2008) H. Xiao et al. SCIENCE
- Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
- (2008) Brian J Haas et al. GENOME BIOLOGY
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started