Identification of candidate genes for key fibre‐related QTL s and derivation of favourable alleles in Gossypium hirsutum recombinant inbred lines with G. barbadense introgressions

Gossypium barbadense and Gossypium hirsutum genomes provide insights into the origin and evolution of allotetraploid cotton

(2019) Yan Hu et al.   NATURE GENETICS

Genotyping-by-sequencing and SNP-arrays are complementary for detecting quantitative trait loci by tagging different haplotypes in association studies

(2019) Sandra S. Negro et al.   BMC PLANT BIOLOGY

Genetic analysis of the fiber quality and yield traits in G. hirsutum background using chromosome segments substitution lines (CSSLs) from Gossypium barbadense

(2018) Lixue Guo et al.   EUPHYTICA

QTL Mapping for Fiber Quality and Yield Traits Based on Introgression Lines Derived from Gossypium hirsutum × G. tomentosum

(2018) et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

QTL delineation for five fiber quality traits based on an intra-specific Gossypium hirsutum L. recombinant inbred line population

(2018) Xiaoyun Jia et al.   MOLECULAR GENETICS AND GENOMICS

Linkage and association mapping reveals the genetic basis of brown fibre (Gossypium hirsutum )

(2018) Tianwang Wen et al.   PLANT BIOTECHNOLOGY JOURNAL

High-Density Genetic Map Construction and Identification of QTLs Controlling Oleic and Linoleic Acid in Peanut using SLAF-seq and SSRs

(2018) X. H. Hu et al.   Scientific Reports

Genetic Map Construction and Fiber Quality QTL Mapping Using the CottonSNP80K Array in Upland Cotton

(2018) Zhaoyun Tan et al.   Frontiers in Plant Science

Wild Relatives of Maize, Rice, Cotton, and Soybean: Treasure Troves for Tolerance to Biotic and Abiotic Stresses

(2018) Jafar Mammadov et al.   Frontiers in Plant Science

Identification of Introgressed Alleles Conferring High Fiber Quality Derived From Gossypium barbadense L. in Secondary Mapping Populations of G. hirsutum L.

(2018) Yu Chen et al.   Frontiers in Plant Science

Genome-wide identification and expression analyses of the pectate lyase (PEL) gene family in cotton (Gossypium hirsutum L.)

(2018) Huiru Sun et al.   BMC GENOMICS

GWAS Analysis and QTL Identification of Fiber Quality Traits and Yield Components in Upland Cotton Using Enriched High-Density SNP Markers

(2018) Ruixian Liu et al.   Frontiers in Plant Science

Reference genome sequences of two cultivated allotetraploid cottons, Gossypium hirsutum and Gossypium barbadense

(2018) Maojun Wang et al.   NATURE GENETICS

Quantitative trait locus mapping of drought and salt tolerance in an introgressed recombinant inbred line population of Upland cotton under the greenhouse and field conditions

(2017) Abdelraheem Abdelraheem et al.   EUPHYTICA

Genomic analyses in cotton identify signatures of selection and loci associated with fiber quality and yield traits

(2017) Lei Fang et al.   NATURE GENETICS

Asymmetric subgenome selection and cis-regulatory divergence during cotton domestication

(2017) Maojun Wang et al.   NATURE GENETICS

Genome-wide association study discovered genetic variation and candidate genes of fibre quality traits in Gossypium hirsutum L.

(2017) Zhengwen Sun et al.   PLANT BIOTECHNOLOGY JOURNAL

Population structure and genetic basis of the agronomic traits of upland cotton in China revealed by a genome-wide association study using high-density SNPs

(2017) Cong Huang et al.   PLANT BIOTECHNOLOGY JOURNAL

High-resolution mapping of QTL for fatty acid composition in soybean using specific-locus amplified fragment sequencing

(2017) Bin Li et al.   THEORETICAL AND APPLIED GENETICS

High-Density Genetic Map Construction and Gene Mapping of Basal Branching Habit and Flowers per Leaf Axil in Sesame

(2017) Hongxian Mei et al.   Frontiers in Plant Science

Genome-Wide Association Study of Major Agronomic Traits Related to Domestication in Peanut

(2017) Xingguo Zhang et al.   Frontiers in Plant Science

Identification of stable quantitative trait loci (QTLs) for fiber quality traits across multiple environments in Gossypium hirsutum recombinant inbred line population

(2016) Muhammad Jamshed et al.   BMC GENOMICS

Construction of a high-density genetic map by specific locus amplified fragment sequencing (SLAF-seq) and its application to Quantitative Trait Loci (QTL) analysis for boll weight in upland cotton (Gossypium hirsutum.)

(2016) Zhen Zhang et al.   BMC PLANT BIOLOGY

Phenotypic variation analysis and QTL mapping for cotton (Gossypium hirsutum L.) fiber quality grown in different cotton-producing regions

(2016) Furong Wang et al.   EUPHYTICA

Epistasis together with partial dominance, over-dominance and QTL by environment interactions contribute to yield heterosis in upland cotton

(2016) Lianguang Shang et al.   THEORETICAL AND APPLIED GENETICS

High-density genetic map construction and identification of a locus controlling weeping trait in an ornamental woody plant (Prunus mume Sieb. et Zucc)

(2015) J. Zhang et al.   DNA RESEARCH

Registration of BARBREN-713 Germplasm Line of Upland Cotton Resistant to Reniform and Root-Knot Nematodes

(2015) Alois A. Bell et al.   Journal of Plant Registrations

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement

(2015) Tianzhen Zhang et al.   NATURE BIOTECHNOLOGY

The enduring mystery of intron-mediated enhancement

(2015) Jenna E. Gallegos et al.   PLANT SCIENCE

Multi-location wheat stripe rust QTL analysis: genetic background and epistatic interactions

(2015) M. Dolores Vazquez et al.   THEORETICAL AND APPLIED GENETICS

Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp.

(2015) A. M. Hulse-Kemp et al.   G3-Genes Genomes Genetics

Sequence-based ultra-dense genetic and physical maps reveal structural variations of allopolyploid cotton genomes

(2015) Sen Wang et al.   GENOME BIOLOGY

An SNP-based saturated genetic map and QTL analysis of fruit-related traits in cucumber using specific-length amplified fragment (SLAF) sequencing

(2015) Qingzhen Wei et al.   BMC GENOMICS

Construction of a high-density genetic map based on large-scale markers developed by specific length amplified fragment sequencing (SLAF-seq) and its application to QTL analysis for isoflavone content in Glycine max

(2014) Bin Li et al.   BMC GENOMICS

Registration of LONREN-1 and LONREN-2 Germplasm Lines of Upland Cotton Resistant to Reniform Nematode

(2014) Alois A. Bell et al.   Journal of Plant Registrations

A comparative meta-analysis of QTL between intraspecific Gossypium hirsutum and interspecific G. hirsutum × G. barbadense populations

(2014) Joseph I. Said et al.   MOLECULAR GENETICS AND GENOMICS

Complexity of the transcriptional network controlling secondary wall biosynthesis

(2014) Ruiqin Zhong et al.   PLANT SCIENCE

Construction and Analysis of High-Density Linkage Map Using High-Throughput Sequencing Data

(2014) Dongyuan Liu et al.   PLoS One

A comprehensive meta QTL analysis for fiber quality, yield, yield related and morphological traits, drought tolerance, and disease resistance in tetraploid cotton

(2013) Joseph I Said et al.   BMC GENOMICS

Construction of a high-density genetic map for sesame based on large scale marker development by specific length amplified fragment (SLAF) sequencing

(2013) Yanxin Zhang et al.   BMC PLANT BIOLOGY

Genetic dissection of the introgressive genomic components from Gossypium barbadense L. that contribute to improved fiber quality in Gossypium hirsutum L.

(2013) Furong Wang et al.   MOLECULAR BREEDING

SLAF-seq: An Efficient Method of Large-Scale De Novo SNP Discovery and Genotyping Using High-Throughput Sequencing

(2013) Xiaowen Sun et al.   PLoS One

Genetic diversity and population structure in the US Upland cotton (Gossypium hirsutum L.)

(2013) Priyanka Tyagi et al.   THEORETICAL AND APPLIED GENETICS

Brittle Culm1, a COBRA-Like Protein, Functions in Cellulose Assembly through Binding Cellulose Microfibrils

(2013) Lifeng Liu et al.   PLoS Genetics

Identification of QTLs for eight agronomically important traits using an ultra-high-density map based on SNPs generated from high-throughput sequencing in sorghum under contrasting photoperiods

(2012) Guihua Zou et al.   JOURNAL OF EXPERIMENTAL BOTANY

Mapping quantitative trait loci for lint yield and fiber quality across environments in a Gossypium hirsutum × Gossypium barbadense backcross inbred line population

(2012) Jiwen Yu et al.   THEORETICAL AND APPLIED GENETICS

The CELLULOSE SYNTHASE-LIKE A and CELLULOSE SYNTHASE-LIKE C families: recent advances and future perspectives

(2012) Aaron H. Liepman et al.   Frontiers in Plant Science

Cotton genetic resources. A review

(2011) Mehboob-ur-Rahman et al.   Agronomy for Sustainable Development

Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC1 population between gossypium hirsutum and G. barbadense

(2011) Yu Yu et al.   BMC GENOMICS

Genetic effects of introgression genomic components from Sea Island cotton (Gossypium barbadense L.) on fiber related traits in upland cotton (G. hirsutum L.)

(2011) Furong Wang et al.   EUPHYTICA

Quantitative trait loci mapping for yield and its components by using two immortalized populations of a heterotic hybrid in Gossypium hirsutum L.

(2011) Renzhong Liu et al.   MOLECULAR BREEDING

NAC domain function and transcriptional control of a secondary cell wall master switch

(2011) Huanzhong Wang et al.   PLANT JOURNAL

Genetic structure and domestication history of the grape

(2011) Sean Myles et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

QTL alleles for improved fiber quality from a wild Hawaiian cotton, Gossypium tomentosum

(2011) Zhengsheng Zhang et al.   THEORETICAL AND APPLIED GENETICS

QTL analysis for yield components and kernel-related traits in maize across multi-environments

(2011) Bo Peng et al.   THEORETICAL AND APPLIED GENETICS

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

TRICHOME BIREFRINGENCE and Its Homolog AT5G01360 Encode Plant-Specific DUF231 Proteins Required for Cellulose Biosynthesis in Arabidopsis

(2010) V. Bischoff et al.   PLANT PHYSIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

The essential role of GhPEL gene, encoding a pectate lyase, in cell wall loosening by depolymerization of the de-esterified pectin during fiber elongation in cotton

(2009) Haihai Wang et al.   PLANT MOLECULAR BIOLOGY

Plant breeders go back to nature

(2008) Dani Zamir   NATURE GENETICS

A Battery of Transcription Factors Involved in the Regulation of Secondary Cell Wall Biosynthesis in Arabidopsis

(2008) R. Zhong et al.   PLANT CELL