Sequence-based ultra-dense genetic and physical maps reveal structural variations of allopolyploid cotton genomes
出版年份 2015 全文链接
标题
Sequence-based ultra-dense genetic and physical maps reveal structural variations of allopolyploid cotton genomes
作者
关键词
Long Terminal Repeat, Centromeric Region, Upland Cotton, Cotton Genome, Tetraploid Cotton
出版物
GENOME BIOLOGY
Volume 16, Issue 1, Pages -
出版商
Springer Nature
发表日期
2015-05-23
DOI
10.1186/s13059-015-0678-1
参考文献
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement
- (2015) Tianzhen Zhang et al. NATURE BIOTECHNOLOGY
- Molecular Mapping of Restriction-Site Associated DNA Markers in Allotetraploid Upland Cotton
- (2015) Yangkun Wang et al. PLoS One
- Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly
- (2014) Amit A Deokar et al. BMC GENOMICS
- Development of EST-based SNP and InDel markers and their utilization in tetraploid cotton genetic mapping
- (2014) Ximei Li et al. BMC GENOMICS
- Development and bin mapping of gene-associated interspecific SNPs for cotton (Gossypium hirsutum L.) introgression breeding efforts
- (2014) Amanda M Hulse-Kemp et al. BMC GENOMICS
- Identification of centromeric regions on the linkage map of cotton using centromere-related repeats
- (2014) Wenpan Zhang et al. GENOMICS
- Genome sequence of the cultivated cotton Gossypium arboreum
- (2014) Fuguang Li et al. NATURE GENETICS
- A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
- (2014) et al. SCIENCE
- Sequence-based SNP genotyping in durum wheat
- (2013) Remco M.P. van Poecke et al. PLANT BIOTECHNOLOGY JOURNAL
- SNP genotyping in melons: genetic variation, population structure, and linkage disequilibrium
- (2013) Cristina Esteras et al. THEORETICAL AND APPLIED GENETICS
- Toward allotetraploid cotton genome assembly: integration of a high-density molecular genetic linkage map with DNA sequence information
- (2012) Liang Zhao et al. BMC GENOMICS
- Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres
- (2012) Andrew H. Paterson et al. NATURE
- Repeatless and Repeat-Based Centromeres in Potato: Implications for Centromere Evolution
- (2012) Z. Gong et al. PLANT CELL
- Molecular Mechanisms of Fiber Differential Development between G. barbadense and G. hirsutum Revealed by Genetical Genomics
- (2012) Xiangdong Chen et al. PLoS One
- A High Resolution Genetic Map Anchoring Scaffolds of the Sequenced Watermelon Genome
- (2012) Yi Ren et al. PLoS One
- NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data
- (2012) Ravi K. Patel et al. PLoS One
- The Cotton Centromere Contains a Ty3-gypsy-like LTR Retroelement
- (2012) Song Luo et al. PLoS One
- A High Density Consensus Genetic Map of Tetraploid Cotton That Integrates Multiple Component Maps through Molecular Marker Redundancy Check
- (2012) Anna Blenda et al. PLoS One
- Localization of high level of sequence conservation and divergence regions in cotton
- (2012) Kai Wang et al. THEORETICAL AND APPLIED GENETICS
- Development and mapping of SNP assays in allotetraploid cotton
- (2012) Robert L. Byers et al. THEORETICAL AND APPLIED GENETICS
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC1 population between gossypium hirsutum and G. barbadense
- (2011) Yu Yu et al. BMC GENOMICS
- MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
- (2011) K. Tamura et al. MOLECULAR BIOLOGY AND EVOLUTION
- Dissecting the genome of the polyploid crop oilseed rape by transcriptome sequencing
- (2011) Ian Bancroft et al. NATURE BIOTECHNOLOGY
- A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
- (2011) Robert J. Elshire et al. PLoS One
- Comparison of a high-density genetic linkage map to genome features in the model grass Brachypodium distachyon
- (2011) Naxin Huo et al. THEORETICAL AND APPLIED GENETICS
- High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
- (2010) David L Hyten et al. BMC GENOMICS
- Meta-analysis of cotton fiber quality QTLs across diverse environments in a Gossypium hirsutum x G. barbadense RIL population
- (2010) Jean-Marc Lacape et al. BMC PLANT BIOLOGY
- Structure and size variations between 12A and 12D homoeologous chromosomes based on high-resolution cytogenetic map in allotetraploid cotton
- (2010) Kai Wang et al. CHROMOSOMA
- The construction of a tetraploid cotton genome wide comprehensive reference map
- (2010) Jing Yu et al. GENOMICS
- Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines
- (2010) Susanna Atwell et al. NATURE
- Genome-wide patterns of genetic variation among elite maize inbred lines
- (2010) Jinsheng Lai et al. NATURE GENETICS
- Mobilization of retrotransposons in synthetic allotetraploid tobacco
- (2010) M. Petit et al. NEW PHYTOLOGIST
- Review of the Application of Modern Cytogenetic Methods (FISH/GISH) to the Study of Reticulation (Polyploidy/Hybridisation)
- (2010) Michael Chester et al. Genes
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- SNP identification in crop plants
- (2009) Martin W Ganal et al. CURRENT OPINION IN PLANT BIOLOGY
- Every genome sequence needs a good map
- (2009) H. A. Lewin et al. GENOME RESEARCH
- High-throughput genotyping by whole-genome resequencing
- (2009) X. Huang et al. GENOME RESEARCH
- De novo assembly of human genomes with massively parallel short read sequencing
- (2009) R. Li et al. GENOME RESEARCH
- The Sorghum bicolor genome and the diversification of grasses
- (2009) Andrew H. Paterson et al. NATURE
- The genome of the cucumber, Cucumis sativus L.
- (2009) Sanwen Huang et al. NATURE GENETICS
- Single nucleotide polymorphism (SNP) discovery in the polyploidBrassica napususing Solexa transcriptome sequencing
- (2009) Martin Trick et al. PLANT BIOTECHNOLOGY JOURNAL
- Maize Centromere Structure and Evolution: Sequence Analysis of Centromeres 2 and 5 Reveals Dynamic Loci Shaped Primarily by Retrotransposons
- (2009) Thomas K. Wolfgruber et al. PLoS Genetics
- Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers
- (2008) Nathan A. Baird et al. PLoS One
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