Does fresh farmyard manure introduce surviving microbes into soil or activate soil-borne microbiota?

Temperature sensitivity of SOM decomposition is linked with a K‐selected microbial community

(2021) Hui Li et al.   GLOBAL CHANGE BIOLOGY

Fertilization regime has a greater effect on soil microbial community structure than crop rotation and growth stage in an agroecosystem

(2020) Zhibin Guo et al.   APPLIED SOIL ECOLOGY

Long-term fertilization rather than plant species shapes rhizosphere and bulk soil prokaryotic communities in agroecosystems

(2020) Mikhail V. Semenov et al.   APPLIED SOIL ECOLOGY

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots

(2019) Samiran Banerjee et al.   ISME Journal

Changes in the rumen and colon microbiota and effects of live yeast dietary supplementation during the transition from the dry period to lactation of dairy cows

(2019) A. Bach et al.   JOURNAL OF DAIRY SCIENCE

One Health - Cycling of diverse microbial communities as a connecting force for soil, plant, animal, human and ecosystem health

(2019) Ariena H.C. van Bruggen et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Trophic Regulations of the Soil Microbiome

(2019) Madhav P. Thakur et al.   TRENDS IN MICROBIOLOGY

Robustness of the autochthonous microbial soil community after amendment of cattle manure or its digestate

(2019) Sabine Marie Podmirseg et al.   BIOLOGY AND FERTILITY OF SOILS

Cattle urine and dung additions differently affect nitrification pathways and greenhouse gas emission in a grassland soil

(2019) Qian Wu et al.   BIOLOGY AND FERTILITY OF SOILS

Application of organic fertilizer improves microbial community diversity and alters microbial network structure in tea (Camellia sinensis) plantation soils

(2019) Songsong Gu et al.   SOIL & TILLAGE RESEARCH

Shift from dormancy to microbial growth revealed by RNA:DNA ratio

(2018) Sebastian Loeppmann et al.   ECOLOGICAL INDICATORS

Distinct responses of soil bacterial and fungal communities to changes in fertilization regime and crop rotation

(2018) Chao Ai et al.   GEODERMA

16S rRNA analysis of diversity of manure microbial community in dairy farm environment

(2018) Pramod Pandey et al.   PLoS One

Salmonella and Fecal Indicator Bacteria Survival in Soils Amended with Poultry Manure

(2018) Claire E. Hruby et al.   WATER AIR AND SOIL POLLUTION

Ecological Restoration of Antibiotic-Disturbed Gastrointestinal Microbiota in Foregut and Hindgut of Cows

(2018) Shoukun Ji et al.   Frontiers in Cellular and Infection Microbiology

Altering the Gut Microbiome of Cattle: Considerations of Host-Microbiome Interactions for Persistent Microbiome Manipulation

(2018) Brooke A. Clemmons et al.   MICROBIAL ECOLOGY

IDTAXA: a novel approach for accurate taxonomic classification of microbiome sequences

(2018) Adithya Murali et al.   Microbiome

Composted Cattle Manure Increases Microbial Activity and Soil Fertility More Than Composted Swine Manure in a Submerged Rice Paddy

(2017) Suvendu Das et al.   Frontiers in Microbiology

Metagenomic characterization of the effect of feed additives on the gut microbiome and antibiotic resistome of feedlot cattle

(2017) Milton Thomas et al.   Scientific Reports

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

An Underground Revolution: Biodiversity and Soil Ecological Engineering for Agricultural Sustainability

(2016) S. Franz Bender et al.   TRENDS IN ECOLOGY & EVOLUTION

Mineral vs. Organic Amendments: Microbial Community Structure, Activity and Abundance of Agriculturally Relevant Microbes Are Driven by Long-Term Fertilization Strategies

(2016) Davide Francioli et al.   Frontiers in Microbiology

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

(2015) A Apprill et al.   AQUATIC MICROBIAL ECOLOGY

Mycelial actinobacteria in salt-affected soils of arid territories of Ukraine and Russia

(2015) V. N. Grishko et al.   EURASIAN SOIL SCIENCE

Diversity and Activity of Lysobacter Species from Disease Suppressive Soils

(2015) Ruth Gómez Expósito et al.   Frontiers in Microbiology

Responses in colonic microbial community and gene expression of pigs to a long-term high resistant starch diet

(2015) Yue Sun et al.   Frontiers in Microbiology

Distinct soil microbial diversity under long-term organic and conventional farming

(2014) Martin Hartmann et al.   ISME Journal

Glyphosate suppresses the antagonistic effect of Enterococcus spp. on Clostridium botulinum

(2013) Monika Krüger et al.   ANAEROBE

Structure of the microbial community in soil catena of the right bank of the Oka River

(2013) M. V. Semenov et al.   BIOLOGY BULLETIN

Interaction of Collimonas strain IS343 with Rhizoctonia solani at low carbon availability in vitro and in soil

(2013) Ilya V. Senechkin et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Active microorganisms in soil: Critical review of estimation criteria and approaches

(2013) Evgenia Blagodatskaya et al.   SOIL BIOLOGY & BIOCHEMISTRY

New primers to amplify the fungal ITS2 region - evaluation by 454-sequencing of artificial and natural communities

(2012) Katarina Ihrmark et al.   FEMS MICROBIOLOGY ECOLOGY

Shifts in the Rumen Microbiota Due to the Type of Carbohydrate and Level of Protein Ingested by Dairy Cattle Are Associated with Changes in Rumen Fermentation

(2012) Alejandro Belanche et al.   JOURNAL OF NUTRITION

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

The rhizosphere microbiome and plant health

(2012) Roeland L. Berendsen et al.   TRENDS IN PLANT SCIENCE

Community Structures of Fecal Bacteria in Cattle from Different Animal Feeding Operations

(2011) Orin C. Shanks et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Assessment of soil microbial diversity measurements as indicators of soil functioning in organic and conventional horticulture systems

(2011) Romina Romaniuk et al.   ECOLOGICAL INDICATORS

Extremophilic and extremotolerant actinomycetes in different soil types

(2011) G. M. Zenova et al.   EURASIAN SOIL SCIENCE

Microbiome analysis of dairy cows fed pasture or total mixed ration diets

(2011) Alexandre B. de Menezes et al.   FEMS MICROBIOLOGY ECOLOGY

Effect of forage-to-concentrate ratio in dairy cow diets on emission of methane, carbon dioxide, and ammonia, lactation performance, and manure excretion

(2011) M.J. Aguerre et al.   JOURNAL OF DAIRY SCIENCE

Short-Term Fluctuations of Sugar Beet Damping-Off byPythium ultimumin Relation to Changes in Bacterial Communities After Organic Amendments to Two Soils

(2011) Miaomiao He et al.   PHYTOPATHOLOGY

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Survival of Escherichia coli in soil with modified microbial community composition

(2011) Zhanbei Liang et al.   SOIL BIOLOGY & BIOCHEMISTRY

Influence of Temperature and Predation on Survival of Salmonella enterica Serovar Typhimurium and Expression of invA in Soil and Manure-Amended Soil

(2010) R. Garcia et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Rumen Microbial Population Dynamics during Adaptation to a High-Grain Diet

(2010) S. C. Fernando et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Composition, spatial distribution, and diversity of the bacterial communities in the rumen of cows fed different forages

(2010) Yunhong Kong et al.   FEMS MICROBIOLOGY ECOLOGY

Influence of aerobic and anaerobic conditions on survival of Escherichia coli O157:H7 and Salmonella enterica serovar Typhimurium in Luria–Bertani broth, farm-yard manure and slurry

(2010) Alexander V. Semenov et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Transfer of Enteric Pathogens to Successive Habitats as Part of Microbial Cycles

(2010) Alexander M. Semenov et al.   MICROBIAL ECOLOGY

Isolation and Partial Characterization of Bacterial Strains on Low Organic Carbon Medium from Soils Fertilized with Different Organic Amendments

(2010) Ilya V. Senechkin et al.   MICROBIAL ECOLOGY

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Assessment of the Microbial Ecology of Ruminal Methanogens in Cattle with Different Feed Efficiencies

(2009) M. Zhou et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Percolation and Survival of Escherichia coli O157:H7 and Salmonella enterica Serovar Typhimurium in Soil Amended with Contaminated Dairy Manure or Slurry

(2009) A. V. Semenov et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dynamics of spore germination and mycelial growth of streptomycetes under low humidity conditions

(2009) D. G. Zvyagintsev et al.   MICROBIOLOGY

Wastewater treatment contributes to selective increase of antibiotic resistance among Acinetobacter spp.

(2009) Yongli Zhang et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Manure-amended soil characteristics affecting the survival of E. coli O157:H7 in 36 Dutch soils

(2008) Eelco Franz et al.   ENVIRONMENTAL MICROBIOLOGY

Modelling the contamination of lettuce withEscherichia coliO157:H7 from manure-amended soil and the effect of intervention strategies

(2008) E. Franz et al.   JOURNAL OF APPLIED MICROBIOLOGY

Streptomyces morphogenetics: dissecting differentiation in a filamentous bacterium

(2008) Klas Flärdh et al.   NATURE REVIEWS MICROBIOLOGY