Linking meta-omics to the kinetics of denitrification intermediates reveals pH-dependent causes of N2O emissions and nitrite accumulation in soil

A comprehensive quantification of global nitrous oxide sources and sinks

(2020) Hanqin Tian et al.   NATURE

Rapid Succession of Actively Transcribing Denitrifier Populations in Agricultural Soil During an Anoxic Spell

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Nitrogen in the environment

(2019) Carly J. Stevens   SCIENCE

Soil HONO emissions at high moisture content are driven by microbial nitrate reduction to nitrite: tackling the HONO puzzle

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Metagenomic analysis reveals distinct patterns of denitrification gene abundance across soil moisture, nitrate gradients

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An evaluation of primers for detecting denitrifiers via their functional genes

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A common mechanism for efficient N 2 O reduction in diverse isolates of nodule‐forming bradyrhizobia

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Functional assembly of nitrous oxide reductase provides insights into copper site maturation

(2019) Lin Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Using metagenomics to reveal landscape scale patterns of denitrifiers in a montane forest ecosystem

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Acceleration of global N2O emissions seen from two decades of atmospheric inversion

(2019) R. L. Thompson et al.   Nature Climate Change

KBase: The United States Department of Energy Systems Biology Knowledgebase

(2018) Adam P Arkin et al.   NATURE BIOTECHNOLOGY

Nitrite kinetics during anoxia: The role of abiotic reactions versus microbial reduction

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Genomics and Ecology of Novel N 2 O-Reducing Microorganisms

(2018) Sara Hallin et al.   TRENDS IN MICROBIOLOGY

Characterization of the quinol-dependent nitric oxide reductase from the pathogen Neisseria meningitidis, an electrogenic enzyme

(2018) Nathalie Gonska et al.   Scientific Reports

A bet-hedging strategy for denitrifying bacteria curtails their release of N2O

(2018) Pawel Lycus et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Catch Crop Residues Stimulate N2O Emissions During Spring, Without Affecting the Genetic Potential for Nitrite and N2O Reduction

(2018) Yun-Feng Duan et al.   Frontiers in Microbiology

Sources and sinks for N2 O, can microbiologist help to mitigate N2 O emissions?

(2017) Lars R. Bakken et al.   ENVIRONMENTAL MICROBIOLOGY

Agricultural soil denitrifiers possess extensive nitrite reductase gene diversity

(2017) Sara Coyotzi et al.   ENVIRONMENTAL MICROBIOLOGY

Soil pH as the chief modifier for regional nitrous oxide emissions: New evidence and implications for global estimates and mitigation

(2017) Yajing Wang et al.   GLOBAL CHANGE BIOLOGY

Phenotypic and genotypic richness of denitrifiers revealed by a novel isolation strategy

(2017) Pawel Lycus et al.   ISME Journal

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

Compound driven differences in N 2 and N 2 O emission from soil; the role of substrate use efficiency and the microbial community

(2017) Madeline E. Giles et al.   SOIL BIOLOGY & BIOCHEMISTRY

Erratum to: Highly diverse nirK genes comprise two major clades that harbour ammonium-producing denitrifiers

(2016) Helen Decleyre et al.   BMC GENOMICS

Modularity of nitrogen-oxide reducing soil bacteria: linking phenotype to genotype

(2016) Constance A. Roco et al.   ENVIRONMENTAL MICROBIOLOGY

The terrestrial biosphere as a net source of greenhouse gases to the atmosphere

(2016) Hanqin Tian et al.   NATURE

Spatial variation in soil pH controls off-season N2O emission in an agricultural soil

(2016) Aina Lundon Russenes et al.   SOIL BIOLOGY & BIOCHEMISTRY

Non-denitrifying nitrous oxide-reducing bacteria - An effective N 2 O sink in soil

(2016) L.A. Domeignoz-Horta et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil acidification and the importance of liming agricultural soils with particular reference to the United Kingdom

(2016) K. W. T. Goulding   SOIL USE AND MANAGEMENT

Fast and sensitive taxonomic classification for metagenomics with Kaiju

(2016) Peter Menzel et al.   Nature Communications

A multi-omic future for microbiome studies

(2016) Janet K. Jansson et al.   Nature Microbiology

Ultrastructural Characterization of the Lower Motor System in a Mouse Model of Krabbe Disease

(2016) Valentina Cappello et al.   Scientific Reports

Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton

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Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Inventories and scenarios of nitrous oxide emissions

(2014) Eric A Davidson et al.   Environmental Research Letters

Fast and sensitive protein alignment using DIAMOND

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Impaired Reduction of N2O to N2 in Acid Soils Is Due to a Posttranscriptional Interference with the Expression of nosZ

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Nitrous oxide emissions from soils: how well do we understand the processes and their controls?

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HONO Emissions from Soil Bacteria as a Major Source of Atmospheric Reactive Nitrogen

(2013) R. Oswald et al.   SCIENCE

Diversity and evolution of bioenergetic systems involved in microbial nitrogen compound transformations

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Nitrous oxide production and consumption: regulation of gene expression by gas-sensitive transcription factors

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Biological sources and sinks of nitrous oxide and strategies to mitigate emissions

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Regulation of denitrification at the cellular level: a clue to the understanding of N2O emissions from soils

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Denitrification regulatory phenotype, a new term for the characterization of denitrifying bacteria

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The NumPy Array: A Structure for Efficient Numerical Computation

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Contrasting denitrifier communities relate to contrasting N2O emission patterns from acidic peat soils in arctic tundra

(2011) Katharina Palmer et al.   ISME Journal

Microbial nitrate respiration – Genes, enzymes and environmental distribution

(2011) Beate Kraft et al.   JOURNAL OF BIOTECHNOLOGY

Soil Nitrite as a Source of Atmospheric HONO and OH Radicals

(2011) H. Su et al.   SCIENCE

Denitrification Response Patterns during the Transition to Anoxic Respiration and Posttranscriptional Effects of Suboptimal pH on Nitrogen Oxide Reductase in Paracoccus denitrificans

(2010) L. Bergaust et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Denitrification at pH 4 by a soil-derived Rhodanobacter-dominated community

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Denitrification gene pools, transcription and kinetics of  NO, N2O and N2 production as affected by soil pH

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Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

Impact of Long-Term Fertilization on the Composition of Denitrifier Communities Based on Nitrite Reductase Analyses in a Paddy Soil

(2010) Zhe Chen et al.   MICROBIAL ECOLOGY

The Evolution and Future of Earth’s Nitrogen Cycle

(2010) Donald E. Canfield et al.   SCIENCE

On the fate of anthropogenic nitrogen

(2009) W. H. Schlesinger   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic Analysis of Nitrite, Nitric Oxide, and Nitrous Oxide Respiratory Enzymes Reveal a Complex Evolutionary History for Denitrification

(2008) Christopher M. Jones et al.   MOLECULAR BIOLOGY AND EVOLUTION