Contrasting denitrifier communities relate to contrasting N2O emission patterns from acidic peat soils in arctic tundra

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

Hot spots for nitrous oxide emissions found in different types of permafrost peatlands

(2011) M. E. MARUSHCHAK et al.   GLOBAL CHANGE BIOLOGY

JAGUC — A SOFTWARE PACKAGE FOR ENVIRONMENTAL DIVERSITY ANALYSES

(2011) MARKUS E. NEBEL et al.   Journal of Bioinformatics and Computational Biology

Denitrifying Bacteria Isolated from Terrestrial Subsurface Sediments Exposed to Mixed-Waste Contamination

(2010) S. J. Green et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Hitherto Unknown [Fe-Fe]-Hydrogenase Gene Diversity in Anaerobes and Anoxic Enrichments from a Moderately Acidic Fen

(2010) O. Schmidt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Soil Resources Influence Spatial Patterns of Denitrifying Communities at Scales Compatible with Land Management

(2010) K. Enwall et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Insights into the Effect of Soil pH on N2O and N2 Emissions and Denitrifier Community Size and Activity

(2010) J. Cuhel et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Horizon-Specific Bacterial Community Composition of German Grassland Soils, as Revealed by Pyrosequencing-Based Analysis of 16S rRNA Genes

(2010) C. Will et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effect of pH and dissolved organic matter on the abundance of nirK and nirS denitrifiers in spruce forest soil

(2010) Jiří Bárta et al.   BIOGEOCHEMISTRY

Denitrification at pH 4 by a soil-derived Rhodanobacter-dominated community

(2010) R. N. Van Den Heuvel et al.   ENVIRONMENTAL MICROBIOLOGY

Depicting more accurate pictures of protistan community complexity using pyrosequencing of hypervariable SSU rRNA gene regions

(2010) Anke Behnke et al.   ENVIRONMENTAL MICROBIOLOGY

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

Denitrification gene pools, transcription and kinetics of  NO, N2O and N2 production as affected by soil pH

(2010) Binbin Liu et al.   FEMS MICROBIOLOGY ECOLOGY

Importance of denitrifiers lacking the genes encoding the nitrous oxide reductase for N2O emissions from soil

(2010) LAURENT PHILIPPOT et al.   GLOBAL CHANGE BIOLOGY

Ecological and evolutionary factors underlying global and local assembly of denitrifier communities

(2010) Christopher M Jones et al.   ISME Journal

Determinants of the distribution of nitrogen-cycling microbial communities at the landscape scale

(2010) D Bru et al.   ISME Journal

Insidious effects of sequencing errors on perceived diversity in molecular surveys

(2010) Ian A. Dickie   NEW PHYTOLOGIST

Potential remobilization of belowground permafrost carbon under future global warming

(2010) P. Kuhry et al.   PERMAFROST AND PERIGLACIAL PROCESSES

Association of Novel and Highly Diverse Acid-Tolerant Denitrifiers with N2O Fluxes of an Acidic Fen

(2009) K. Palmer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genome-Derived Criteria for Assigning Environmental narG and nosZ Sequences to Operational Taxonomic Units of Nitrate Reducers

(2009) K. Palmer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Abundance of Novel and Diverse tfdA-Like Genes, Encoding Putative Phenoxyalkanoic Acid Herbicide-Degrading Dioxygenases, in Soil

(2009) A. Zaprasis et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Mapping field-scale spatial patterns of size and activity of the denitrifier community

(2009) Laurent Philippot et al.   ENVIRONMENTAL MICROBIOLOGY

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment

(2009) Shoko Iwai et al.   ISME Journal

Effects of freeze–thaw cycles on anaerobic microbial processes in an Arctic intertidal mud flat

(2009) Joanna E Sawicka et al.   ISME Journal

Specific transformations of mineral forms of nitrogen in acid soils

(2009) Mirjana Kresovic et al.   JOURNAL OF THE SERBIAN CHEMICAL SOCIETY

Effect of Freeze-Thaw Cycles on Bacterial Communities of Arctic Tundra Soil

(2009) Minna K. Männistö et al.   MICROBIAL ECOLOGY

Large N2O emissions from cryoturbated peat soil in tundra

(2009) Maija E. Repo et al.   Nature Geoscience

Accurate determination of microbial diversity from 454 pyrosequencing data

(2009) Christopher Quince et al.   NATURE METHODS

ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences

(2009) Yijun Sun et al.   NUCLEIC ACIDS RESEARCH

Nitrous Oxide (N2O): The Dominant Ozone-Depleting Substance Emitted in the 21st Century

(2009) A. R. Ravishankara et al.   SCIENCE

MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences

(2008) S. Kumar et al.   BRIEFINGS IN BIOINFORMATICS

Responses of Antarctic soil microbial communities and associated functions to temperature and freeze-thaw cycle frequency

(2008) Etienne Yergeau et al.   ENVIRONMENTAL MICROBIOLOGY

Towards a universally adaptable method for quantitative extraction of high-purity nucleic acids from soil

(2008) Derek Peršoh et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Phylogenetic Analysis of Nitrite, Nitric Oxide, and Nitrous Oxide Respiratory Enzymes Reveal a Complex Evolutionary History for Denitrification

(2008) Christopher M. Jones et al.   MOLECULAR BIOLOGY AND EVOLUTION