Children with Autism and Their Typically Developing Siblings Differ in Amplicon Sequence Variants and Predicted Functions of Stool-Associated Microbes

Impact of Clostridium Bacteria in Children with Autism Spectrum Disorder and Their Anthropometric Measurements

(2020) Wafaa A. Kandeel et al.   JOURNAL OF MOLECULAR NEUROSCIENCE

Differences in fecal microbial metabolites and microbiota of children with autism spectrum disorders

(2018) Dae-Wook Kang et al.   ANAEROBE

Co-biodegradation of anthracene and naphthalene by the bacterium Acinetobacter johnsonii

(2018) Yan Jiang et al.   JOURNAL OF ENVIRONMENTAL SCIENCE AND HEALTH PART A-TOXIC/HAZARDOUS SUBSTANCES & ENVIRONMENTAL ENGINEERING

Butyrate: A Double-Edged Sword for Health?

(2018) Hu Liu et al.   Advances in Nutrition

Kineothrix alysoides, gen. nov., sp. nov., a saccharolytic butyrate-producer within the family Lachnospiraceae

(2017)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies

(2017)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

Sparsifying machine learning models identify stable subsets of predictive features for behavioral detection of autism

(2017) Sebastien Levy et al.   Molecular Autism

Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: an open-label study

(2017) Dae-Wook Kang et al.   Microbiome

Microbiota-related Changes in Bile Acid & Tryptophan Metabolism are Associated with Gastrointestinal Dysfunction in a Mouse Model of Autism

(2017) Anna V. Golubeva et al.   EBioMedicine

Colonic Butyrate-Producing Communities in Humans: an Overview Using Omics Data

(2017) Marius Vital et al.   mSystems

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Comparative In silico Analysis of Butyrate Production Pathways in Gut Commensals and Pathogens

(2016) Swadha Anand et al.   Frontiers in Microbiology

Preservation Methods Differ in Fecal Microbiome Stability, Affecting Suitability for Field Studies

(2016) Se Jin Song et al.   mSystems

The Genetic Analysis of an Acinetobacter johnsonii Clinical Strain Evidenced the Presence of Horizontal Genetic Transfer

(2016) Sabrina Montaña et al.   PLoS One

Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes

(2016) Shoko Iwai et al.   PLoS One

In Situ Anabolic Activity of Periodontal Pathogens Porphyromonas gingivalis and Filifactor alocis in Chronic Periodontitis

(2016) Ralee Spooner et al.   Scientific Reports

Obese-type Gut Microbiota Induce Neurobehavioral Changes in the Absence of Obesity

(2015) Annadora J. Bruce-Keller et al.   BIOLOGICAL PSYCHIATRY

Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples

(2015) Alma E. Parada et al.   ENVIRONMENTAL MICROBIOLOGY

Relationships between diet-related changes in the gut microbiome and cognitive flexibility

(2015) K.R. Magnusson et al.   NEUROSCIENCE

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Insights into the Role of Erysipelotrichaceae in the Human Host

(2015) Nadeem O. Kaakoush   Frontiers in Cellular and Infection Microbiology

Searching for a minimal set of behaviors for autism detection through feature selection-based machine learning

(2015) J A Kosmicki et al.   Translational Psychiatry

Classification, Identification, and Clinical Significance of Haemophilus and Aggregatibacter Species with Host Specificity for Humans

(2014) N. Norskov-Lauritsen   CLINICAL MICROBIOLOGY REVIEWS

The Potential of Accelerating Early Detection of Autism through Content Analysis of YouTube Videos

(2014) Vincent A. Fusaro et al.   PLoS One

Testing the accuracy of an observation-based classifier for rapid detection of autism risk

(2014) M Duda et al.   Translational Psychiatry

Bifidobacteria: their impact on gut microbiota composition and their applications as probiotics in infants

(2013) Diana Di Gioia et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The role of microbiome in central nervous system disorders

(2013) Yan Wang et al.   BRAIN BEHAVIOR AND IMMUNITY

Microbiota Modulate Behavioral and Physiological Abnormalities Associated with Neurodevelopmental Disorders

(2013) Elaine Y. Hsiao et al.   CELL

Toward Effective Probiotics for Autism and Other Neurodevelopmental Disorders

(2013) Jack A. Gilbert et al.   CELL

Differential abundance analysis for microbial marker-gene surveys

(2013) Joseph N Paulson et al.   NATURE METHODS

Markers of Celiac Disease and Gluten Sensitivity in Children with Autism

(2013) Nga M. Lau et al.   PLoS One

Reduced Incidence of Prevotella and Other Fermenters in Intestinal Microflora of Autistic Children

(2013) Dae-Wook Kang et al.   PLoS One

Fecal Microbiota and Metabolome of Children with Autism and Pervasive Developmental Disorder Not Otherwise Specified

(2013) Maria De Angelis et al.   PLoS One

Increased abundance of Sutterella spp. and Ruminococcus torques in feces of children with autism spectrum disorder

(2013) Lv Wang et al.   Molecular Autism

Parental Age and Autism Spectrum Disorders

(2012) Erik Thorlund Parner et al.   ANNALS OF EPIDEMIOLOGY

Molecular Characterisation of Gastrointestinal Microbiota of Children With Autism (With and Without Gastrointestinal Dysfunction) and Their Neurotypical Siblings

(2012) Shakuntla V. Gondalia et al.   Autism Research

Elevated Fecal Short Chain Fatty Acid and Ammonia Concentrations in Children with Autism Spectrum Disorder

(2012) Lv Wang et al.   DIGESTIVE DISEASES AND SCIENCES

Ruminococcus bromii is a keystone species for the degradation of resistant starch in the human colon

(2012) Xiaolei Ze et al.   ISME Journal

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Crowdsourced Health Research Studies: An Important Emerging Complement to Clinical Trials in the Public Health Research Ecosystem

(2012) Melanie Swan   JOURNAL OF MEDICAL INTERNET RESEARCH

Human gut microbiome viewed across age and geography

(2012) Tanya Yatsunenko et al.   NATURE

Sharing Heterogeneous Data: The National Database for Autism Research

(2012) Dan Hall et al.   NEUROINFORMATICS

Hypothesis Testing and Power Calculations for Taxonomic-Based Human Microbiome Data

(2012) Patricio S. La Rosa et al.   PLoS One

Use of machine learning to shorten observation-based screening and diagnosis of autism

(2012) D P Wall et al.   Translational Psychiatry

State of the art; microbiology in health and disease. Intestinal bacterial flora in autism

(2011) Sydney M. Finegold   ANAEROBE

Low Relative Abundances of the Mucolytic Bacterium Akkermansia muciniphila and Bifidobacterium spp. in Feces of Children with Autism

(2011) Lv Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Gastrointestinal flora and gastrointestinal status in children with autism – comparisons to typical children and correlation with autism severity

(2011) James B Adams et al.   BMC GASTROENTEROLOGY

Bifidobacteria can protect from enteropathogenic infection through production of acetate

(2011) Shinji Fukuda et al.   NATURE

The anxiolytic effect of Bifidobacterium longum NCC3001 involves vagal pathways for gut-brain communication

(2011) P. Bercik et al.   NEUROGASTROENTEROLOGY AND MOTILITY

Impaired Carbohydrate Digestion and Transport and Mucosal Dysbiosis in the Intestines of Children with Autism and Gastrointestinal Disturbances

(2011) Brent L. Williams et al.   PLoS One

Ingestion of Lactobacillus strain regulates emotional behavior and central GABA receptor expression in a mouse via the vagus nerve

(2011) J. A. Bravo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pyrosequencing study of fecal microflora of autistic and control children

(2010) Sydney M. Finegold et al.   ANAEROBE

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Level of Trace Elements (Copper, Zinc, Magnesium and Selenium) and Toxic Elements (Lead and Mercury) in the Hair and Nail of Children with Autism

(2010) Malarveni Damodaran Lakshmi Priya et al.   BIOLOGICAL TRACE ELEMENT RESEARCH

List of new names and new combinations previously effectively, but not validly, published

(2010)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Alterations of the Intestinal Barrier in Patients With Autism Spectrum Disorders and in Their First-degree Relatives

(2010) Laura de Magistris et al.   JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION

Urinary Metabolic Phenotyping Differentiates Children with Autism from Their Unaffected Siblings and Age-Matched Controls

(2010) Ivan K. S. Yap et al.   JOURNAL OF PROTEOME RESEARCH

Increased urinary excretion of a 3-(3-hydroxyphenyl)-3-hydroxypropionic acid (HPHPA), an abnormal phenylalanine metabolite ofClostridiaspp. in the gastrointestinal tract, in urine samples from patients with autism and schizophrenia

(2010) William Shaw   NUTRITIONAL NEUROSCIENCE

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Association of symptoms with gastrointestinal microbiota in irritable bowel syndrome

(2010) Erja Malinen   WORLD JOURNAL OF GASTROENTEROLOGY

Unique Lipids from a Common Human Bacterium Represent a New Class of Toll-Like Receptor 2 Ligands Capable of Enhancing Autoimmunity

(2009) Frank C. Nichols et al.   AMERICAN JOURNAL OF PATHOLOGY

GAGE: generally applicable gene set enrichment for pathway analysis

(2009) Weijun Luo et al.   BMC BIOINFORMATICS

Prenatal risk factors for autism: comprehensive meta-analysis

(2009) Hannah Gardener et al.   BRITISH JOURNAL OF PSYCHIATRY

Phylogenetic diversity metrics for ecological communities: integrating species richness, abundance and evolutionary history

(2009) Marc W. Cadotte et al.   ECOLOGY LETTERS

Distribution of periodontopathic bacterial species in Japanese children with developmental disabilities

(2009) Shuhei Naka et al.   BMC Oral Health

The probiotic Bifidobacteria infantis: An assessment of potential antidepressant properties in the rat

(2008) Lieve Desbonnet et al.   JOURNAL OF PSYCHIATRIC RESEARCH