Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes
出版年份 2019 全文链接
标题
Cryptic inoviruses revealed as pervasive in bacteria and archaea across Earth’s biomes
作者
关键词
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出版物
Nature Microbiology
Volume -, Issue -, Pages -
出版商
Springer Science and Business Media LLC
发表日期
2019-07-23
DOI
10.1038/s41564-019-0510-x
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注意:仅列出部分参考文献,下载原文获取全部文献信息。- Bacteriophage trigger antiviral immunity and prevent clearance of bacterial infection
- (2019) Johanna M. Sweere et al. SCIENCE
- Evolution of mutualism from parasitism in experimental virus populations
- (2018) Jason W. Shapiro et al. EVOLUTION
- Viruses of archaea: Structural, functional, environmental and evolutionary genomics
- (2018) Mart Krupovic et al. VIRUS RESEARCH
- Post-segregational Killing and Phage Inhibition Are Not Mediated by Cell Death Through Toxin/Antitoxin Systems
- (2018) Sooyeon Song et al. Frontiers in Microbiology
- Origins and Evolution of the Global RNA Virome
- (2018) Yuri I. Wolf et al. mBio
- Nontargeted virus sequence discovery pipeline and virus clustering for metagenomic data
- (2017) David Paez-Espino et al. Nature Protocols
- The enigmatic archaeal virosphere
- (2017) David Prangishvili et al. NATURE REVIEWS MICROBIOLOGY
- A virulence-associated filamentous bacteriophage of Neisseria meningitidis increases host-cell colonisation
- (2017) Emmanuelle Bille et al. PLoS Pathogens
- Microfluidic-based mini-metagenomics enables discovery of novel microbial lineages from complex environmental samples
- (2017) Feiqiao Brian Yu et al. eLife
- The Discovery, Mechanisms, and Evolutionary Impact of Anti-CRISPRs
- (2017) Adair L. Borges et al. Annual Review of Virology
- Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life
- (2017) Donovan H. Parks et al. Nature Microbiology
- Bacteriophage evolution differs by host, lifestyle and genome
- (2017) Travis N. Mavrich et al. Nature Microbiology
- Taxonomy of prokaryotic viruses: 2016 update from the ICTV bacterial and archaeal viruses subcommittee
- (2016) Evelien M. Adriaenssens et al. ARCHIVES OF VIROLOGY
- Bipartite Network Analysis of the Archaeal Virosphere: Evolutionary Connections between Viruses and Capsidless Mobile Elements
- (2016) Jaime Iranzo et al. JOURNAL OF VIROLOGY
- Uncovering Earth’s virome
- (2016) David Paez-Espino et al. NATURE
- Structures of replication initiation proteins from staphylococcal antibiotic resistance plasmids reveal protein asymmetry and flexibility are necessary for replication
- (2016) Stephen B. Carr et al. NUCLEIC ACIDS RESEARCH
- The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis
- (2016) Vikram Alva et al. NUCLEIC ACIDS RESEARCH
- Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
- (2016) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- IMG/M: integrated genome and metagenome comparative data analysis system
- (2016) I-Min A. Chen et al. NUCLEIC ACIDS RESEARCH
- Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements
- (2016) Supratim Mukherjee et al. NUCLEIC ACIDS RESEARCH
- The Double-Stranded DNA Virosphere as a Modular Hierarchical Network of Gene Sharing
- (2016) Jaime Iranzo et al. mBio
- Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs
- (2016) Emiley A. Eloe-Fadrosh et al. Nature Communications
- Streamlining the Design-to-Build Transition with Build-Optimization Software Tools
- (2016) Ernst Oberortner et al. ACS Synthetic Biology
- Horizontal gene transfer and genome evolution in Methanosarcina
- (2015) Sofya K. Garushyants et al. BMC EVOLUTIONARY BIOLOGY
- Filamentous bacteriophages and their role in the virulence and evolution of pathogenic bacteria
- (2015) T. S. Ilyina Molecular Genetics Microbiology and Virology
- CRISPR-Cas immunity in prokaryotes
- (2015) Luciano A. Marraffini NATURE
- The Phyre2 web portal for protein modeling, prediction and analysis
- (2015) Lawrence A Kelley et al. Nature Protocols
- An updated evolutionary classification of CRISPR–Cas systems
- (2015) Kira S. Makarova et al. NATURE REVIEWS MICROBIOLOGY
- Rising to the challenge: accelerated pace of discovery transforms marine virology
- (2015) Jennifer R. Brum et al. NATURE REVIEWS MICROBIOLOGY
- Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation
- (2015) Nuala A. O'Leary et al. NUCLEIC ACIDS RESEARCH
- The Pfam protein families database: towards a more sustainable future
- (2015) Robert D. Finn et al. NUCLEIC ACIDS RESEARCH
- Origins and evolution of viruses of eukaryotes: The ultimate modularity
- (2015) Eugene V. Koonin et al. VIROLOGY
- VirSorter: mining viral signal from microbial genomic data
- (2015) Simon Roux et al. PeerJ
- Regularization Paths for Cox's Proportional Hazards Model via Coordinate Descent
- (2015) Noah Simon et al. Journal of Statistical Software
- Poly peak parser: Method and software for identification of unknown indels using sanger sequencing of polymerase chain reaction products
- (2014) Jonathon T. Hill et al. DEVELOPMENTAL DYNAMICS
- IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies
- (2014) Lam-Tung Nguyen et al. MOLECULAR BIOLOGY AND EVOLUTION
- NCBI Viral Genomes Resource
- (2014) J. Rodney Brister et al. NUCLEIC ACIDS RESEARCH
- SDT: A Virus Classification Tool Based on Pairwise Sequence Alignment and Identity Calculation
- (2014) Brejnev Muhizi Muhire et al. PLoS One
- Structure and assembly of filamentous bacteriophages
- (2014) D.A. Marvin et al. PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY
- The Role of Prophage in Plant-Pathogenic Bacteria
- (2013) Alessandro M. Varani et al. Annual Review of Phytopathology
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Networks of evolutionary interactions underlying the polyphyletic origin of ssDNA viruses
- (2013) Mart Krupovic Current Opinion in Virology
- CD-HIT: accelerated for clustering the next-generation sequencing data
- (2012) Limin Fu et al. BIOINFORMATICS
- Genomics of Bacterial and Archaeal Viruses: Dynamics within the Prokaryotic Virosphere
- (2011) M. Krupovic et al. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS
- HHblits: lightning-fast iterative protein sequence searching by HMM-HMM alignment
- (2011) Michael Remmert et al. NATURE METHODS
- SignalP 4.0: discriminating signal peptides from transmembrane regions
- (2011) Thomas Nordahl Petersen et al. NATURE METHODS
- Multilevel Compression of Random Walks on Networks Reveals Hierarchical Organization in Large Integrated Systems
- (2011) Martin Rosvall et al. PLoS One
- Accelerated Profile HMM Searches
- (2011) Sean R. Eddy PLoS Computational Biology
- BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments
- (2010) Alexis Criscuolo et al. BMC EVOLUTIONARY BIOLOGY
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
- (2009) S. Capella-Gutierrez et al. BIOINFORMATICS
- Jalview Version 2--a multiple sequence alignment editor and analysis workbench
- (2009) A. M. Waterhouse et al. BIOINFORMATICS
- BLAST+: architecture and applications
- (2009) Christiam Camacho et al. BMC BIOINFORMATICS
- Methanolobus profundi sp. nov., a methylotrophic methanogen isolated from deep subsurface sediments in a natural gas field
- (2009) H. Mochimaru et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- Laboratory procedures to generate viral metagenomes
- (2009) Rebecca V Thurber et al. Nature Protocols
- PBAD-Based Shuttle Vectors for Functional Analysis of Toxic and Highly Regulated Genes in Pseudomonas and Burkholderia spp. and Other Bacteria
- (2008) D. Qiu et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Conditional Variable Importance for Random Forests
- (2008) Carolin Strobl et al. BMC BIOINFORMATICS
- The biofilm life cycle and virulence of Pseudomonas aeruginosa are dependent on a filamentous prophage
- (2008) Scott A Rice et al. ISME Journal
- Stamped microbattery electrodes based on self-assembled M13 viruses
- (2008) K. T. Nam et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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