The Genome of Winter Moth (Operophtera brumata) Provides a Genomic Perspective on Sexual Dimorphism and Phenology

Functional circadian clock genes are essential for the overwintering diapause of the Northern house mosquito, Culex pipiens

(2015) M. E. Meuti et al.   JOURNAL OF EXPERIMENTAL BIOLOGY

Characterization and expression of the cytochrome P450 gene family in diamondback moth, Plutella xylostella (L.)

(2015) Liying Yu et al.   Scientific Reports

Correction

(2015)   ANNALS OF THE ENTOMOLOGICAL SOCIETY OF AMERICA

Reversible Trait Loss: The Genetic Architecture of Female Ornaments

(2014) Ken Kraaijeveld   Annual Review of Ecology Evolution and Systematics

The complete mitogenome of Apocheima cinerarius (Lepidoptera: Geometridae: Ennominae) and comparison with that of other lepidopteran insects

(2014) Shuxian Liu et al.   GENE

The Glanville fritillary genome retains an ancient karyotype and reveals selective chromosomal fusions in Lepidoptera

(2014) Virpi Ahola et al.   Nature Communications

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads

(2013) P. Novak et al.   BIOINFORMATICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

A heterozygous moth genome provides insights into herbivory and detoxification

(2013) Minsheng You et al.   NATURE GENETICS

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

(2013) Christoph Hahn et al.   NUCLEIC ACIDS RESEARCH

Sequencing and De Novo Assembly of the Western Tarnished Plant Bug (Lygus hesperus) Transcriptome

(2013) J. Joe Hull et al.   PLoS One

Timing and Patterns in the Taxonomic Diversification of Lepidoptera (Butterflies and Moths)

(2013) Niklas Wahlberg et al.   PLoS One

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

HaploMerger: Reconstructing allelic relationships for polymorphic diploid genome assemblies

(2012) S. Huang et al.   GENOME RESEARCH

Linkage map of the peppered moth, Biston betularia (Lepidoptera, Geometridae): a model of industrial melanism

(2012) A E Van't Hof et al.   HEREDITY

Deep Sequencing Identifies Viral and Wasp Genes with Potential Roles in Replication of Microplitis demolitor Bracovirus

(2012) G. R. Burke et al.   JOURNAL OF VIROLOGY

MITOS: Improved de novo metazoan mitochondrial genome annotation

(2012) Matthias Bernt et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

(2012) Kanchon K. Dasmahapatra et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

MonarchBase: the monarch butterfly genome database

(2012) Shuai Zhan et al.   NUCLEIC ACIDS RESEARCH

Evolutionary response of the egg hatching date of a herbivorous insect under climate change

(2012) Margriet van Asch et al.   Nature Climate Change

Toward almost closed genomes with GapFiller

(2012) Marten Boetzer et al.   GENOME BIOLOGY

BadiRate: estimating family turnover rates by likelihood-based methods

(2011) P. Librado et al.   BIOINFORMATICS

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

The Monarch Butterfly Genome Yields Insights into Long-Distance Migration

(2011) Shuai Zhan et al.   CELL

Sex chromosome evolution in moths and butterflies

(2011) Ken Sahara et al.   CHROMOSOME RESEARCH

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Association between Circadian Clock Genes and Diapause Incidence in Drosophila triauraria

(2011) Hirokazu Yamada et al.   PLoS One

Animal clocks: a multitude of molecular mechanisms for circadian timekeeping

(2011) Mirko Pegoraro et al.   Wiley Interdisciplinary Reviews-RNA

Circadian Organization of Behavior and Physiology in Drosophila

(2010) Ravi Allada et al.   Annual Review of Physiology

P450s in plant–insect interactions

(2010) Mary A. Schuler   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Arthropod CYPomes illustrate the tempo and mode in P450 evolution

(2010) R. Feyereisen   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Sex-specific methylation in Drosophila: an investigation of the Sophophora subgenus

(2010) Marícia Fantinel D’Ávila et al.   GENETICA

Molecular analysis of sex chromosome-linked mutants in the silkworm Bombyx mori

(2010) Tsuguru Fujii et al.   JOURNAL OF GENETICS

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Functional and Evolutionary Insights from the Genomes of Three Parasitoid Nasonia Species

(2010) J. H. Werren et al.   SCIENCE

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

The Silkworm Z Chromosome Is Enriched in Testis-Specific Genes

(2009) K. P. Arunkumar et al.   GENETICS

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Complications of complexity: integrating environmental, genetic and hormonal control of insect diapause

(2009) Kevin J. Emerson et al.   TRENDS IN GENETICS

Aggressive assembly of pyrosequencing reads with mates

(2008) Jason R. Miller et al.   BIOINFORMATICS

YOU CAN'T KEEP A GOOD PARASITE DOWN: EVOLUTION OF A MALE-KILLER SUPPRESSOR UNCOVERS CYTOPLASMIC INCOMPATIBILITY

(2008) Emily A. Hornett et al.   EVOLUTION

genBlastA: Enabling BLAST to identify homologous gene sequences

(2008) R. She et al.   GENOME RESEARCH

ALLPATHS: De novo assembly of whole-genome shotgun microreads

(2008) J. Butler et al.   GENOME RESEARCH

Genome-wide screening and characterization of transposable elements and their distribution analysis in the silkworm, Bombyx mori

(2008) Mizuko Osanai-Futahashi et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

The genome of a lepidopteran model insect, the silkworm Bombyx mori

(2008) The International Silkworm Genome   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

Comparative analysis of circadian clock genes in insects

(2008) F. Sandrelli et al.   INSECT MOLECULAR BIOLOGY

Sexual dimorphism in the compound eye of the moth Operophtera brumata (Lepidoptera, Geometridae)

(2008) Victor Benno Meyer-Rochow et al.   INVERTEBRATE BIOLOGY

Genome Evolution of Wolbachia Strain wPip from the Culex pipiens Group

(2008) L. Klasson et al.   MOLECULAR BIOLOGY AND EVOLUTION

The complete nucleotide sequence of the mitochondrial genome of Phthonandria atrilineata (Lepidoptera: Geometridae)

(2008) Ling Yang et al.   MOLECULAR BIOLOGY REPORTS

The genome of the model beetle and pest Tribolium castaneum

(2008) Stephen Richards et al.   NATURE

Wolbachia: master manipulators of invertebrate biology

(2008) John H. Werren et al.   NATURE REVIEWS MICROBIOLOGY

SUPERFAMILY—sophisticated comparative genomics, data mining, visualization and phylogeny

(2008) Derek Wilson et al.   NUCLEIC ACIDS RESEARCH

Systematic position of Lythriini revised: transferred from Larentiinae to Sterrhinae (Lepidoptera, Geometridae)

(2008) Erki unap et al.   ZOOLOGICA SCRIPTA