标题
Linking Plant Secondary Metabolites and Plant Microbiomes: A Review
作者
关键词
-
出版物
Frontiers in Plant Science
Volume 12, Issue -, Pages -
出版商
Frontiers Media SA
发表日期
2021-03-02
DOI
10.3389/fpls.2021.621276
参考文献
相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。- The Connection and Disconnection Between Microbiome and Metabolome: A Critical Appraisal in Clinical Research
- (2020) Biswapriya B. Misra Biological Research for Nursing
- Co-incidence of Damage and Microbial Patterns Controls Localized Immune Responses in Roots
- (2020) Feng Zhou et al. CELL
- Gut microbiota-derived metabolites as key actors in inflammatory bowel disease
- (2020) Aonghus Lavelle et al. Nature Reviews Gastroenterology & Hepatology
- Rhizosphere microbiome mediates systemic root metabolite exudation by root-to-root signaling
- (2020) Elisa Korenblum et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Modulation of dysregulated cancer metabolism by plant secondary metabolites: A mechanistic review
- (2020) Sajad Fakhri et al. SEMINARS IN CANCER BIOLOGY
- A Model for Nitrogen Fixation in Cereal Crops
- (2020) Alan B. Bennett et al. TRENDS IN PLANT SCIENCE
- Promoting Model Systems of Microbiota–Medicinal Plant Interactions
- (2020) Valentina Maggini et al. TRENDS IN PLANT SCIENCE
- Root flavonoids are related to enhanced AMF colonization of an invasive tree
- (2020) Yingchun Pei et al. AoB Plants
- Modulation of the Root Microbiome by Plant Molecules: The Basis for Targeted Disease Suppression and Plant Growth Promotion
- (2020) Alberto Pascale et al. Frontiers in Plant Science
- Jasmonic Acid, Not Salicyclic Acid Restricts Endophytic Root Colonization of Rice
- (2020) Xi Chen et al. Frontiers in Plant Science
- Root ethylene mediates rhizosphere microbial community reconstruction when chemically detecting cyanide produced by neighbouring plants
- (2020) Yan Chen et al. Microbiome
- Spatial metabolomics of in situ host–microbe interactions at the micrometre scale
- (2020) Benedikt Geier et al. Nature Microbiology
- Visualizing Microbial Community Dynamics via a Controllable Soil Environment
- (2020) Arunima Bhattacharjee et al. mSystems
- Cannabis Microbiome and the Role of Endophytes in Modulating the Production of Secondary Metabolites: An Overview
- (2020) Meysam Taghinasab et al. Microorganisms
- M2IA: a web server for microbiome and metabolome integrative analysis
- (2020) Yan Ni et al. BIOINFORMATICS
- A Cardiovascular Disease-Linked Gut Microbial Metabolite Acts via Adrenergic Receptors
- (2020) Ina Nemet et al. CELL
- An Arabidopsis Secondary Metabolite Directly Targets Expression of the Bacterial Type III Secretion System to Inhibit Bacterial Virulence
- (2020) Wei Wang et al. Cell Host & Microbe
- Heritable variation in root secondary metabolites is associated with recent climate
- (2020) Zoe Bont et al. JOURNAL OF ECOLOGY
- Plant surface metabolites as potent antifungal agents
- (2020) Olga Dubey et al. PLANT PHYSIOLOGY AND BIOCHEMISTRY
- Bacterial community richness shifts the balance between volatile organic compound-mediated microbe–pathogen and microbe–plant interactions
- (2020) Waseem Raza et al. PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Harnessing rhizosphere microbiomes for drought-resilient crop production
- (2020) Franciska T. de Vries et al. SCIENCE
- Microbiome-Mediated Stress Resistance in Plants
- (2020) Hongwei Liu et al. TRENDS IN PLANT SCIENCE
- A practical guide to amplicon and metagenomic analysis of microbiome data
- (2020) Yong-Xin Liu et al. Protein & Cell
- Functional Imaging of Microbial Interactions With Tree Roots Using a Microfluidics Setup
- (2020) Marie-Francoise Noirot-Gros et al. Frontiers in Plant Science
- Temporospatial shifts in the human gut microbiome and metabolome after gastric bypass surgery
- (2020) Zehra Esra Ilhan et al. npj Biofilms and Microbiomes
- More is better: the diversity of terpene metabolism in plants
- (2020) Fei Zhou et al. CURRENT OPINION IN PLANT BIOLOGY
- Towards a functional understanding of the plant metabolome
- (2020) Monika Kosmacz et al. CURRENT OPINION IN PLANT BIOLOGY
- Yucasin and cinnamic acid inhibit IAA and flavonoids biosynthesis minimizing interaction between maize and endophyte Aspergillus nomius
- (2020) Asif Mehmood et al. SYMBIOSIS
- Achieving similar root microbiota composition in neighbouring plants through airborne signalling
- (2020) Hyun Gi Kong et al. ISME Journal
- A single bacterial genus maintains root growth in a complex microbiome
- (2020) Omri M. Finkel et al. NATURE
- Does Karrikin Signaling Shape the Rhizomicrobiome via the Strigolactone Biosynthetic Pathway?
- (2020) Fahad Nasir et al. TRENDS IN PLANT SCIENCE
- Coumarin Communication Along the Microbiome–Root–Shoot Axis
- (2020) Max J.J. Stassen et al. TRENDS IN PLANT SCIENCE
- Fungi–Nematode Interactions: Diversity, Ecology, and Biocontrol Prospects in Agriculture
- (2020) Ying Zhang et al. Journal of Fungi
- Sphinganine-Analog Mycotoxins (SAMs): Chemical Structures, Bioactivities, and Genetic Controls
- (2020) Jia Chen et al. Journal of Fungi
- Driving factors of epiphytic bacterial communities: A review
- (2019) Rudolf O. Schlechter et al. Journal of Advanced Research
- The soybean rhizosphere: metabolites, microbes, and beyond—A review
- (2019) Akifumi Sugiyama Journal of Advanced Research
- A review on the plant microbiome: Ecology, functions, and emerging trends in microbial application
- (2019) Stéphane Compant et al. Journal of Advanced Research
- Plant Defense by VOC-Induced Microbial Priming
- (2019) Hongwei Liu et al. TRENDS IN PLANT SCIENCE
- Volatile profile of Echinacea purpurea plants after in vitro endophyte infection
- (2019) Valentina Maggini et al. NATURAL PRODUCT RESEARCH
- Metabolic regulation of the maize rhizobiome by benzoxazinoids
- (2019) T. E. Anne Cotton et al. ISME Journal
- Linking soil's volatilome to microbes and plant roots highlights the importance of microbes as emitters of belowground volatile signals
- (2019) Schenkel Denis et al. ENVIRONMENTAL MICROBIOLOGY
- Strategy for Structural Elucidation of Polysaccharides: Elucidation of a Maize Mucilage that Harbors Diazotrophic Bacteria
- (2019) Matthew J. Amicucci et al. ANALYTICAL CHEMISTRY
- Exploring bacterial and fungal endophytic microbiomes of Salicornia europaea
- (2019) Bliss Ursula Furtado et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- A genomic island in a plant beneficial rhizobacterium encodes novel antimicrobial fatty acids and a self‐protection shield to enhance its competition
- (2019) Dandan Wang et al. ENVIRONMENTAL MICROBIOLOGY
- Functional Fungal Endophytes in Coleus forskohlii Regulate Labdane Diterpene Biosynthesis for Elevated Forskolin Accumulation in Roots
- (2019) Anthati Mastan et al. MICROBIAL ECOLOGY
- Systems Biology of Plant-Microbiome Interactions
- (2019) Patricia A. Rodriguez et al. Molecular Plant
- NRT1.1B is associated with root microbiota composition and nitrogen use in field-grown rice
- (2019) Jingying Zhang et al. NATURE BIOTECHNOLOGY
- Natural fumigation as a mechanism for volatile transport between flower organs
- (2019) Benoît Boachon et al. Nature Chemical Biology
- Phytobiome metabolism: beneficial soil microbes steer crop plants' secondary metabolism
- (2019) Elisa Korenblum et al. PEST MANAGEMENT SCIENCE
- The Age of Coumarins in Plant–Microbe Interactions
- (2019) Ioannis A Stringlis et al. PLANT AND CELL PHYSIOLOGY
- A specialized metabolic network selectively modulates Arabidopsis root microbiota
- (2019) Ancheng C. Huang et al. SCIENCE
- Recently duplicated sesterterpene (C25) gene clusters in Arabidopsis thaliana modulate root microbiota
- (2019) Qingwen Chen et al. Science China-Life Sciences
- Endophytic Consortium With Diverse Gene-Regulating Capabilities of Benzylisoquinoline Alkaloids Biosynthetic Pathway Can Enhance Endogenous Morphine Biosynthesis in Papaver somniferum
- (2019) Tania Ray et al. Frontiers in Microbiology
- Maize synthesized benzoxazinoids affect the host associated microbiome
- (2019) Enoch Narh Kudjordjie et al. Microbiome
- iMAP: an integrated bioinformatics and visualization pipeline for microbiome data analysis
- (2019) Teresia M. Buza et al. BMC BIOINFORMATICS
- Biotransformation of Huperzine B by a Fungal Endophyte of Huperzia serrata
- (2019) Zha‐Jun Zhan et al. CHEMISTRY & BIODIVERSITY
- Soil-mediated impacts of an invasive thistle inhibit the recruitment of certain native plants
- (2019) Jason D. Verbeek et al. OECOLOGIA
- Role and exploitation of underground chemical signaling in plants
- (2019) Alessandra Guerrieri et al. PEST MANAGEMENT SCIENCE
- Root exudates: from plant to rhizosphere and beyond
- (2019) Vicente Vives-Peris et al. PLANT CELL REPORTS
- Root-specific camalexin biosynthesis controls the plant growth-promoting effects of multiple bacterial strains
- (2019) Anna Koprivova et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Plant-derived coumarins shape the composition of an Arabidopsis synthetic root microbiome
- (2019) Mathias J. E. E. E. Voges et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Plant specialized metabolites modulate root microbiomes
- (2019) Pengchao Wang et al. Science China-Life Sciences
- Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences
- (2019) Himel Mallick et al. Nature Communications
- The influence of Echinacea purpurea leaf microbiota on chicoric acid level
- (2019) Valentina Maggini et al. Scientific Reports
- iMicrobe: Tools and data-driven discovery platform for the microbiome sciences
- (2019) Ken Youens-Clark et al. GigaScience
- Conversions of Benzoxazinoids and Downstream Metabolites by Soil Microorganisms
- (2019) Vadim Schütz et al. Frontiers in Ecology and Evolution
- Plant-Microbe Interactions Facing Environmental Challenge
- (2019) Yu Ti Cheng et al. Cell Host & Microbe
- Plant root exudation under drought: implications for ecosystem functioning
- (2019) Alex Williams et al. NEW PHYTOLOGIST
- Strigolactones shape the rhizomicrobiome in rice (Oryza sativa)
- (2019) Fahad Nasir et al. PLANT SCIENCE
- Enrichment of soil rare bacteria in root by an invasive plant Ageratina adenophora
- (2019) Lin Chen et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Deciphering rhizosphere microbiome assembly of wild and modern common bean (Phaseolus vulgaris) in native and agricultural soils from Colombia
- (2019) Juan E. Pérez-Jaramillo et al. Microbiome
- Strategy for Intercorrelation Identification between Metabolome and Microbiome
- (2019) Dandan Liang et al. ANALYTICAL CHEMISTRY
- MDiNE: A model to estimate differential co-occurrence networks in microbiome studies
- (2019) Kevin McGregor et al. BIOINFORMATICS
- Learning representations of microbe–metabolite interactions
- (2019) James T. Morton et al. NATURE METHODS
- Comparison between tumors in plants and human beings: Mechanisms of tumor development and therapy with secondary plant metabolites
- (2019) Cornelia I. Ullrich et al. PHYTOMEDICINE
- A Promiscuous CYP706A3 Reduces Terpene Volatile Emission from Arabidopsis Flowers, Affecting Florivores and the Floral Microbiome
- (2019) Benoît Boachon et al. PLANT CELL
- Regulation of sugar and storage oil metabolism by phytochrome during de-etiolation
- (2019) Toshiaki Kozuka et al. PLANT PHYSIOLOGY
- Pathogen-induced activation of disease-suppressive functions in the endophytic root microbiome
- (2019) Víctor J. Carrión et al. SCIENCE
- Significant alterations in soil fungal communities along a chronosequence of Spartina alterniflora invasion in a Chinese Yellow Sea coastal wetland
- (2019) Wen Yang et al. SCIENCE OF THE TOTAL ENVIRONMENT
- The effects of soil phosphorus content on plant microbiota are driven by the plant phosphate starvation response
- (2019) Omri M. Finkel et al. PLOS BIOLOGY
- Patterns of PCR Amplification Artifacts of the Fungal Barcode Marker in a Hybrid Mushroom
- (2019) Jun-Liang Zhou et al. Frontiers in Microbiology
- Dual Mode of the Saponin Aescin in Plant Protection: Antifungal Agent and Plant Defense Elicitor
- (2019) Lucie Trdá et al. Frontiers in Plant Science
- A Bioinformatics Guide to Plant Microbiome Analysis
- (2019) Rares Lucaciu et al. Frontiers in Plant Science
- Host identity determines plant associated resistomes
- (2019) Qing-Lin Chen et al. ENVIRONMENTAL POLLUTION
- Isolation and characterization of Burkholderia cenocepacia CR318, a phosphate solubilizing bacterium promoting corn growth
- (2019) Man You et al. MICROBIOLOGICAL RESEARCH
- Rhizosphere modelling reveals spatiotemporal distribution of daidzein shaping soybean rhizosphere bacterial community
- (2019) Fuki Okutani et al. PLANT CELL AND ENVIRONMENT
- Transcriptomic analysis of field-droughted sorghum from seedling to maturity reveals biotic and metabolic responses
- (2019) Nelle Varoquaux et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Allelopathic Plants: Models for Studying Plant–Interkingdom Interactions
- (2019) Niklas Schandry et al. TRENDS IN PLANT SCIENCE
- The role of rhizodeposits in shaping rhizomicrobiome
- (2019) Tao Tian et al. Environmental Microbiology Reports
- Defining and Evaluating Microbial Contributions to Metabolite Variation in Microbiome-Metabolome Association Studies
- (2019) Cecilia Noecker et al. mSystems
- Plant Secondary Metabolite Diversity and Species Interactions
- (2018) André Kessler et al. Annual Review of Ecology Evolution and Systematics
- The Soil-Borne Legacy
- (2018) Peter A.H.M. Bakker et al. CELL
- Bacteria colonising Penstemon digitalis show volatile and tissue-specific responses to a natural concentration range of the floral volatile linalool
- (2018) Rosalie C. F. Burdon et al. CHEMOECOLOGY
- Plant growth-promoting rhizobacteria (PGPR) in Cannabis sativa ‘Finola’ cultivation: An alternative fertilization strategy to improve plant growth and quality characteristics
- (2018) Giancarlo Pagnani et al. INDUSTRIAL CROPS AND PRODUCTS
- Core Microbiome of Medicinal Plant Salvia miltiorrhiza Seed: A Rich Reservoir of Beneficial Microbes for Secondary Metabolism?
- (2018) Haimin Chen et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Calling from distance: attraction of soil bacteria by plant root volatiles
- (2018) Kristin Schulz-Bohm et al. ISME Journal
- Gut metabolome meets microbiome: A methodological perspective to understand the relationship between host and microbe
- (2018) Santosh Lamichhane et al. METHODS
- The Functional Potential of the Rhizospheric Microbiome of an Invasive Tree Species, Acacia dealbata
- (2018) Casper N. Kamutando et al. MICROBIAL ECOLOGY
- Exometabolomic Profiling of Bacterial Strains as Cultivated Using Arabidopsis Root Extract as the Sole Carbon Source
- (2018) Richard P. Jacoby et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Response of Plant Secondary Metabolites to Environmental Factors
- (2018) et al. MOLECULES
- Modulation of plant chemistry by beneficial root microbiota
- (2018) Desalegn W. Etalo et al. NATURAL PRODUCT REPORTS
- Biosynthesis of redox-active metabolites in response to iron deficiency in plants
- (2018) Jakub Rajniak et al. Nature Chemical Biology
- Integration of multi-omics data and deep phenotyping enables prediction of cytokine responses
- (2018) Olivier B. Bakker et al. NATURE IMMUNOLOGY
- Dynamics of oxygen and carbon dioxide in rhizospheres of Lobelia dortmanna - a planar optode study of belowground gas exchange between plants and sediment
- (2018) Nikola Lenzewski et al. NEW PHYTOLOGIST
- Correction for Xu et al., Drought delays development of the sorghum root microbiome and enriches for monoderm bacteria
- (2018) PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- MYB72-dependent coumarin exudation shapes root microbiome assembly to promote plant health
- (2018) Ioannis A. Stringlis et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Root-exuded coumarin shapes the root microbiome
- (2018) Derek S. Lundberg et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Strigolactones as Regulators of Symbiotrophy of Plants and Microorganisms
- (2018) O. Yu. Shtark et al. RUSSIAN JOURNAL OF PLANT PHYSIOLOGY
- Co-occurrence patterns of soybean rhizosphere microbiome at a continental scale
- (2018) Baogang Zhang et al. SOIL BIOLOGY & BIOCHEMISTRY
- Roles of Plant-Associated Microbiota in Traditional Herbal Medicine
- (2018) Weijuan Huang et al. TRENDS IN PLANT SCIENCE
- Feed Your Friends: Do Plant Exudates Shape the Root Microbiome?
- (2018) Joelle Sasse et al. TRENDS IN PLANT SCIENCE
- Root exudate metabolites drive plant-soil feedbacks on growth and defense by shaping the rhizosphere microbiota
- (2018) Lingfei Hu et al. Nature Communications
- Compositional shifts in root-associated bacterial and archaeal microbiota track the plant life cycle in field-grown rice
- (2018) Joseph A. Edwards et al. PLOS BIOLOGY
- Design of synthetic bacterial communities for predictable plant phenotypes
- (2018) Sur Herrera Paredes et al. PLOS BIOLOGY
- Drought Stress and Root-Associated Bacterial Communities
- (2018) Dan Naylor et al. Frontiers in Plant Science
- Ethylene and 1-Aminocyclopropane-1-carboxylate (ACC) in Plant–Bacterial Interactions
- (2018) Francisco X. Nascimento et al. Frontiers in Plant Science
- Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly
- (2018) Kateryna Zhalnina et al. Nature Microbiology
- Metabolome analysis for investigating host-gut microbiota interactions
- (2018) Michael X. Chen et al. JOURNAL OF THE FORMOSAN MEDICAL ASSOCIATION
- Evidence for the primacy of living root inputs, not root or shoot litter, in forming soil organic carbon
- (2018) Noah W. Sokol et al. NEW PHYTOLOGIST
- Endophytic Pseudomonas induces metabolic flux changes that enhance medicinal sesquiterpenoid accumulation in Atractylodes lancea
- (2018) Jia–Yu Zhou et al. PLANT PHYSIOLOGY AND BIOCHEMISTRY
- Plant neighbor detection and allelochemical response are driven by root-secreted signaling chemicals
- (2018) Chui-Hua Kong et al. Nature Communications
- Root exudate metabolomes change under drought and show limited capacity for recovery
- (2018) Albert Gargallo-Garriga et al. Scientific Reports
- Nitrogen fixation in a landrace of maize is supported by a mucilage-associated diazotrophic microbiota
- (2018) Allen Van Deynze et al. PLOS BIOLOGY
- Root exudates drive the soil-borne legacy of aboveground pathogen infection
- (2018) Jun Yuan et al. Microbiome
- Microbial Interkingdom Interactions in Roots Promote Arabidopsis Survival
- (2018) Paloma Durán et al. CELL
- Microbially Produced Imidazole Propionate Impairs Insulin Signaling through mTORC1
- (2018) Ara Koh et al. CELL
- Mycobiome diversity: high-throughput sequencing and identification of fungi
- (2018) R. Henrik Nilsson et al. NATURE REVIEWS MICROBIOLOGY
- Plant-mediated effects of soil phosphorus on the root-associated fungal microbiota in Arabidopsis thaliana
- (2018) Izabela Fabiańska et al. NEW PHYTOLOGIST
- Comprehensive review of antimicrobial activities of plant flavonoids
- (2018) Ireneusz Górniak et al. PHYTOCHEMISTRY REVIEWS
- Exploring the Diversity of Plant Metabolism
- (2018) Chuanying Fang et al. TRENDS IN PLANT SCIENCE
- Simple statistical identification and removal of contaminant sequences in marker-gene and metagenomics data
- (2018) Nicole M. Davis et al. Microbiome
- Root isoflavonoids and hairy root transformation influence key bacterial taxa in the soybean rhizosphere
- (2017) Laura J. White et al. ENVIRONMENTAL MICROBIOLOGY
- Epiphytic Bacteria Alter Floral Scent Emissions
- (2017) Carola Helletsgruber et al. JOURNAL OF CHEMICAL ECOLOGY
- Common and distinct components in data fusion
- (2017) Age K. Smilde et al. JOURNAL OF CHEMOMETRICS
- Root microbiota drive direct integration of phosphate stress and immunity
- (2017) Gabriel Castrillo et al. NATURE
- MicrobiomeAnalyst: a web-based tool for comprehensive statistical, visual and meta-analysis of microbiome data
- (2017) Achal Dhariwal et al. NUCLEIC ACIDS RESEARCH
- Metabolite profiling of non-sterile rhizosphere soil
- (2017) Pierre Pétriacq et al. PLANT JOURNAL
- Bacterial Biosensors for in Vivo Spatiotemporal Mapping of Root Secretion
- (2017) Francesco Pini et al. PLANT PHYSIOLOGY
- Live imaging of root–bacteria interactions in a microfluidics setup
- (2017) Hassan Massalha et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Few effects of invasive plants Reynoutria japonica , Rudbeckia laciniata and Solidago gigantea on soil physical and chemical properties
- (2017) Anna M. Stefanowicz et al. SCIENCE OF THE TOTAL ENVIRONMENT
- Evolution of the Crop Rhizosphere: Impact of Domestication on Root Exudates in Tetraploid Wheat (Triticum turgidum L.)
- (2017) Anna Iannucci et al. Frontiers in Plant Science
- Huanglongbing impairs the rhizosphere-to-rhizoplane enrichment process of the citrus root-associated microbiome
- (2017) Yunzeng Zhang et al. Microbiome
- Deciphering composition and function of the root microbiome of a legume plant
- (2017) Kyle Hartman et al. Microbiome
- Evolution of gut microbiota composition from birth to 24 weeks in the INFANTMET Cohort
- (2017) Cian J. Hill et al. Microbiome
- Microbiome Helper: a Custom and Streamlined Workflow for Microbiome Research
- (2017) André M. Comeau et al. mSystems
- Alleviation of drought stress by mycorrhizas is related to increased root H2O2 efflux in trifoliate orange
- (2017) Yong-Ming Huang et al. Scientific Reports
- Effects of jasmonic acid signalling on the wheat microbiome differ between body sites
- (2017) Hongwei Liu et al. Scientific Reports
- Plant-endophytes interaction influences the secondary metabolism in Echinacea purpurea (L.) Moench: an in vitro model
- (2017) Valentina Maggini et al. Scientific Reports
- SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
- (2016) Diego C. B. Mariano et al. BMC BIOINFORMATICS
- Separating common from distinctive variation
- (2016) Frans M. van der Kloet et al. BMC BIOINFORMATICS
- MMinte: an application for predicting metabolic interactions among the microbial species in a community
- (2016) Helena Mendes-Soares et al. BMC BIOINFORMATICS
- Shifts in plant foliar and floral metabolomes in response to the suppression of the associated microbiota
- (2016) Albert Gargallo-Garriga et al. BMC PLANT BIOLOGY
- Correlation detection strategies in microbial data sets vary widely in sensitivity and precision
- (2016) Sophie Weiss et al. ISME Journal
- Jasmonic Acid and Ethylene Signaling Pathways Regulate Glucosinolate Levels in Plants During Rhizobacteria-Induced Systemic Resistance Against a Leaf-Chewing Herbivore
- (2016) Nurmi Pangesti et al. JOURNAL OF CHEMICAL ECOLOGY
- Optimization of large-scale pseudotargeted metabolomics method based on liquid chromatography–mass spectrometry
- (2016) Ping Luo et al. JOURNAL OF CHROMATOGRAPHY A
- Systemic enrichment of antifungal traits in the rhizosphere microbiome after pathogen attack
- (2016) Jan-Hendrik Dudenhöffer et al. JOURNAL OF ECOLOGY
- Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota
- (2016) Stefanía Magnúsdóttir et al. NATURE BIOTECHNOLOGY
- The ecology and biogeochemistry of stream biofilms
- (2016) Tom J. Battin et al. NATURE REVIEWS MICROBIOLOGY
- Root exudates drive interspecific facilitation by enhancing nodulation and N2fixation
- (2016) Bai Li et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Bidirectional Interaction between Phyllospheric Microbiotas and Plant Volatile Emissions
- (2016) Gerard Farré-Armengol et al. TRENDS IN PLANT SCIENCE
- Signaling in the Rhizosphere
- (2016) Vittorio Venturi et al. TRENDS IN PLANT SCIENCE
- VSEARCH: a versatile open source tool for metagenomics
- (2016) Torbjørn Rognes et al. PeerJ
- Metabolic Model-Based Integration of Microbiome Taxonomic and Metabolomic Profiles Elucidates Mechanistic Links between Ecological and Metabolic Variation
- (2016) Cecilia Noecker et al. mSystems
- The Effect of Root Exudate 7,4′-Dihydroxyflavone and Naringenin on Soil Bacterial Community Structure
- (2016) Márton Szoboszlay et al. PLoS One
- CCLasso: correlation inference for compositional data through Lasso
- (2015) Huaying Fang et al. BIOINFORMATICS
- Error filtering, pair assembly and error correction for next-generation sequencing reads
- (2015) Robert C. Edgar et al. BIOINFORMATICS
- Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley
- (2015) Davide Bulgarelli et al. Cell Host & Microbe
- The Dynamics of the Human Infant Gut Microbiome in Development and in Progression toward Type 1 Diabetes
- (2015) Aleksandar D. Kostic et al. Cell Host & Microbe
- Microbiome-metabolome analysis reveals unhealthy alterations in the composition and metabolism of ruminal microbiota with increasing dietary grain in a goat model
- (2015) Sheng-Yong Mao et al. ENVIRONMENTAL MICROBIOLOGY
- Linking Jasmonic Acid Signaling, Root Exudates, and Rhizosphere Microbiomes
- (2015) Lilia C. Carvalhais et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- Secondary metabolites in plant innate immunity: conserved function of divergent chemicals
- (2015) Anna Piasecka et al. NEW PHYTOLOGIST
- Molecular signals required for the establishment and maintenance of ectomycorrhizal symbioses
- (2015) Kevin Garcia et al. NEW PHYTOLOGIST
- Ethylene: traffic controller on hormonal crossroads to defense
- (2015) Colette Broekgaarden et al. PLANT PHYSIOLOGY
- Salicylic acid modulates colonization of the root microbiome by specific bacterial taxa
- (2015) S. L. Lebeis et al. SCIENCE
- PIPITS: an automated pipeline for analyses of fungal internal transcribed spacer sequences from the Illumina sequencing platform
- (2015) Hyun S. Gweon et al. Methods in Ecology and Evolution
- Sparse and Compositionally Robust Inference of Microbial Ecological Networks
- (2015) Zachary D. Kurtz et al. PLoS Computational Biology
- Proportionality: A Valid Alternative to Correlation for Relative Data
- (2015) David Lovell et al. PLoS Computational Biology
- Associations with rhizosphere bacteria can confer an adaptive advantage to plants
- (2015) Cara H. Haney et al. Nature Plants
- Plant defence inducers rapidly influence the diversity of bacterial communities in a potting mix
- (2014) Lilia C. Carvalhais et al. APPLIED SOIL ECOLOGY
- The Treatment-Naive Microbiome in New-Onset Crohn’s Disease
- (2014) Dirk Gevers et al. Cell Host & Microbe
- The fungal leaf endophyte Paraconiothyrium variabile specifically metabolizes the host-plant metabolome for its own benefit
- (2014) Yuan Tian et al. PHYTOCHEMISTRY
- Flavonoids in plant rhizospheres: secretion, fate and their effects on biological communication
- (2014) Akifumi Sugiyama et al. Plant Biotechnology
- Removal of floral microbiota reduces floral terpene emissions
- (2014) Josep Peñuelas et al. Scientific Reports
- A Synthetic Community Approach Reveals Plant Genotypes Affecting the Phyllosphere Microbiota
- (2014) Natacha Bodenhausen et al. PLoS Genetics
- Joint and individual variation explained (JIVE) for integrated analysis of multiple data types
- (2013) Eric F. Lock et al. Annals of Applied Statistics
- Jasmonates: biosynthesis, perception, signal transduction and action in plant stress response, growth and development. An update to the 2007 review in Annals of Botany
- (2013) C. Wasternack et al. ANNALS OF BOTANY
- Metabolic potential of endophytic bacteria
- (2013) Günter Brader et al. CURRENT OPINION IN BIOTECHNOLOGY
- The impact of microbial symbionts on host plant utilization by herbivorous insects
- (2013) Allison K. Hansen et al. MOLECULAR ECOLOGY
- A Novel Integrated Method for Large-Scale Detection, Identification, and Quantification of Widely Targeted Metabolites: Application in the Study of Rice Metabolomics
- (2013) Wei Chen et al. Molecular Plant
- UPARSE: highly accurate OTU sequences from microbial amplicon reads
- (2013) Robert C Edgar NATURE METHODS
- Activation of the Jasmonic Acid Plant Defence Pathway Alters the Composition of Rhizosphere Bacterial Communities
- (2013) Lilia C. Carvalhais et al. PLoS One
- The microbiome of medicinal plants: diversity and importance for plant growth, quality and health
- (2013) Martina Köberl et al. Frontiers in Microbiology
- Integrative analysis of the microbiome and metabolome of the human intestinal mucosal surface reveals exquisite inter-relationships
- (2013) Ian H McHardy et al. Microbiome
- Harnessing the rhizosphere microbiome through plant breeding and agricultural management
- (2012) Matthew G. Bakker et al. PLANT AND SOIL
- Microbial Co-occurrence Relationships in the Human Microbiome
- (2012) Karoline Faust et al. PLoS Computational Biology
- Inferring Correlation Networks from Genomic Survey Data
- (2012) Jonathan Friedman et al. PLoS Computational Biology
- Benzoxazinoid Metabolites Regulate Innate Immunity against Aphids and Fungi in Maize
- (2011) Shakoor Ahmad et al. PLANT PHYSIOLOGY
- Metagenomic systems biology of the human gut microbiome reveals topological shifts associated with obesity and inflammatory bowel disease
- (2011) S. Greenblum et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Detecting Novel Associations in Large Data Sets
- (2011) D. N. Reshef et al. SCIENCE
- Effects of Jasmonic Acid, Ethylene, and Salicylic Acid Signaling on the Rhizosphere Bacterial Community ofArabidopsis thaliana
- (2010) Rogier F. Doornbos et al. MOLECULAR PLANT-MICROBE INTERACTIONS
- QIIME allows analysis of high-throughput community sequencing data
- (2010) J Gregory Caporaso et al. NATURE METHODS
- Trichoderma virens, a Plant Beneficial Fungus, Enhances Biomass Production and Promotes Lateral Root Growth through an Auxin-Dependent Mechanism in Arabidopsis
- (2009) H. A. Contreras-Cornejo et al. PLANT PHYSIOLOGY
- Bacterial volatiles and their action potential
- (2008) Marco Kai et al. APPLIED MICROBIOLOGY AND BIOTECHNOLOGY
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started