Metagenomic analysis of anammox communities in three different microbial aggregates

Refined NrfA Phylogeny Improves PCR-BasednrfAGene Detection

(2014) Allana Welsh et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Modeling of Simultaneous Anaerobic Methane and Ammonium Oxidation in a Membrane Biofilm Reactor

(2014) Xueming Chen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Three-Dimensional Stratification of Bacterial Biofilm Populations in a Moving Bed Biofilm Reactor for Nitritation-Anammox

(2014) Robert Almstrand et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Denitrification versus respiratory ammonification: environmental controls of two competing dissimilatory NO3−/NO2− reduction pathways in Shewanella loihica strain PV-4

(2014) Sukhwan Yoon et al.   ISME Journal

Deterministic processes guide long-term synchronised population dynamics in replicate anaerobic digesters

(2014) Inka Vanwonterghem et al.   ISME Journal

The environmental controls that govern the end product of bacterial nitrate respiration

(2014) B. Kraft et al.   SCIENCE

Nitrogen Removal by a Nitritation-Anammox Bioreactor at Low Temperature

(2013) Ziye Hu et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A comparison of two 16S rRNA gene-based PCR primer sets in unraveling anammox bacteria from different environmental samples

(2013) Ping Han et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Nitrogen removal with the anaerobic ammonium oxidation process

(2013) Ziye Hu et al.   BIOTECHNOLOGY LETTERS

Pathways and Organisms Involved in Ammonia Oxidation and Nitrous Oxide Emission

(2013) Jianhua Guo et al.   CRITICAL REVIEWS IN ENVIRONMENTAL SCIENCE AND TECHNOLOGY

Linking microbial community structure, interactions and function in anaerobic digesters using new molecular techniques

(2013) Inka Vanwonterghem et al.   CURRENT OPINION IN BIOTECHNOLOGY

Hotspots of anaerobic ammonium oxidation at land–freshwater interfaces

(2013) Guibing Zhu et al.   Nature Geoscience

Going for mainstream deammonification from bench to full scale for maximized resource efficiency

(2013) B. Wett et al.   WATER SCIENCE AND TECHNOLOGY

The metagenome of the marine anammox bacterium ‘CandidatusScalindua profunda’ illustrates the versatility of this globally important nitrogen cycle bacterium

(2012) Jack van de Vossenberg et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial Structures, Functions, and Metabolic Pathways in Wastewater Treatment Bioreactors Revealed Using High-Throughput Sequencing

(2012) Lin Ye et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Metagenomic and Metatranscriptomic Analysis of Microbial Community Structure and Gene Expression of Activated Sludge

(2012) Ke Yu et al.   PLoS One

Metagenome Analysis of a Complex Community Reveals the Metabolic Blueprint of Anammox Bacterium “Candidatus Jettenia asiatica”

(2012) Ziye Hu et al.   Frontiers in Microbiology

Regime Shift and Microbial Dynamics in a Sequencing Batch Reactor for Nitrification and Anammox Treatment of Urine

(2011) Helmut Bürgmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Advances in methods for detection of anaerobic ammonium oxidizing (anammox) bacteria

(2011) Meng Li et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The metagenomic basis of anammox metabolism inCandidatus‘Brocadia fulgida’

(2011) Fabio Gori et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

A metagenome of a full-scale microbial community carrying out enhanced biological phosphorus removal

(2011) Mads Albertsen et al.   ISME Journal

454 Pyrosequencing reveals bacterial diversity of activated sludge from 14 sewage treatment plants

(2011) Tong Zhang et al.   ISME Journal

Molecular mechanism of anaerobic ammonium oxidation

(2011) Boran Kartal et al.   NATURE

eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges

(2011) S. Powell et al.   NUCLEIC ACIDS RESEARCH

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

(2011) Daniel Aird et al.   GENOME BIOLOGY

Microbial Nitrogen Cycling Processes in Oxygen Minimum Zones

(2010) Phyllis Lam et al.   Annual Review of Marine Science

Microbial and Physicochemical Characteristics of Compact Anaerobic Ammonium-Oxidizing Granules in an Upflow Anaerobic Sludge Blanket Reactor

(2010) B. J. Ni et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Assembly algorithms for next-generation sequencing data

(2010) Jason R. Miller et al.   GENOMICS

A human gut microbial gene catalogue established by metagenomic sequencing

(2010) Junjie Qin et al.   NATURE

Ab initio gene identification in metagenomic sequences

(2010) Wenhan Zhu et al.   NUCLEIC ACIDS RESEARCH

Sewage Treatment with Anammox

(2010) B. Kartal et al.   SCIENCE

Identification and quantification of anammox bacteria in eight nitrogen removal reactors

(2010) Bao-lan Hu et al.   WATER RESEARCH

Aggregate Size and Architecture Determine Microbial Activity Balance for One-Stage Partial Nitritation and Anammox

(2009) S. E. Vlaeminck et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Modeling a granule-based anaerobic ammonium oxidizing (ANAMMOX) process

(2009) Bing-Jie Ni et al.   BIOTECHNOLOGY AND BIOENGINEERING

Biochemistry and molecular biology of anammox bacteria

(2009) Mike S. M. Jetten et al.   CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

Methods for unveiling cryptic microbial partnerships in nature

(2009) Victoria J Orphan   CURRENT OPINION IN MICROBIOLOGY

De novo assembly of human genomes with massively parallel short read sequencing

(2009) R. Li et al.   GENOME RESEARCH

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Optimization of three FISH procedures for in situ detection of anaerobic ammonium oxidizing bacteria in biological wastewater treatment

(2009) Marko Pavlekovic et al.   JOURNAL OF MICROBIOLOGICAL METHODS

SOAP: short oligonucleotide alignment program

(2008) R. Li et al.   BIOINFORMATICS

The membrane bioreactor: A novel tool to grow anammox bacteria as free cells

(2008) Wouter R.L. van der Star et al.   BIOTECHNOLOGY AND BIOENGINEERING

Enrichment and characterization of marine anammox bacteria associated with global nitrogen gas production

(2008) Jack van de Vossenberg et al.   ENVIRONMENTAL MICROBIOLOGY

Diversity of ammonium-oxidizing bacteria in a granular sludge anaerobic ammonium-oxidizing (anammox) reactor

(2008) Zhe-Xue Quan et al.   ENVIRONMENTAL MICROBIOLOGY

Anammox bacteria: from discovery to application

(2008) J. Gijs Kuenen   NATURE REVIEWS MICROBIOLOGY

Granular biomass capable of partial nitritation and anammox

(2008) S. E. Vlaeminck et al.   WATER SCIENCE AND TECHNOLOGY